Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Reina Sofía (Córdoba)
Hospital Admission Unit None
Patient Sex F
Patient Age 68
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation abscess
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC-3
MLST 512:gapA(54), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(79)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 32 R R
CEF >128 R R
AZT >128 R R
MEM 128 R R
IMI 64 R R
IMI-RELE 0.5 S S
ERT 64 R R
FOSFO None None None
GENTA 1 S S
TOBRA 16 R R
AMK 16 S R
CIP >128 R R
COLIS 128 NWT R
AI2813_v1
AI2813_v1

Sample 471 was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2813_v1_c1 471 512 Browse 30 5075 5407064 1.00
Klebsiella pneumoniae
57.39 Non-mobilizable - - - - - - - - CP008932 0.20360400 1226
AI2813_v1_c2 471 512 Browse 9 126 116235 1.84
Klebsiella pneumoniae
53.77 Non-mobilizable IncFIB 000097__NC_025166_00051 - - MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_019389_00068, NC_023332_00154, NC_014312_00118, NC_021502_00131, NC_019389_00080, NC_023905_00125 - - KF874498 0.00378594 1220
AI2813_v1_c3 471 512 Browse 5 59 47554 3.69
Citrobacter freundii
52.57 Conjugative IncN 000155__CP018649 MOBF NC_015599_00019 MPF_T NC_009131_00030, NC_011617_00041, NC_014368_00014, NC_007682_00044, NC_008612_00190, NC_022375_00024 MOBF NZ_CP016498 KC960485 0.00334352 933
AI2813_v1_c4 471 512 Browse 1 51 43380 2.76
Klebsiella pneumoniae
46.83 Conjugative IncX3 000221__NC_025130_00012 MOBP NC_020552_00059 MPF_T NC_023277_00163, NC_019157_00029, NC_019157_00030, NC_019083_00030, NC_017624_00009 - - JN247852 0.00009552 664
AI2813_v1_c5 471 512 Browse 2 15 13636 7.19
Klebsiella pneumoniae
53.70 Mobilizable ColRNAI_rep_cluster_1857 000003__NC_002119_00001 MOBC NC_009793_00003 - - - - JN247853 0.00000000 762