Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Puerta del Mar (Cádiz)
Hospital Admission Unit Nephrology
Patient Sex F
Patient Age 55
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation peritoneal fluid
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC-3
MLST 512:gapA(54), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(79)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 8 S S
CEF >128 R R
AZT >128 R R
MEM 128 R R
IMI 16 R R
IMI-RELE ≤0.25 S S
ERT 128 R R
FOSFO 64 S R
GENTA 1 S S
TOBRA 16 R R
AMK 32 I R
CIP 128 R R
COLIS 8 NWT R
AI2836_v1
AI2836_v1

Sample 73 was assembled with Unicycler_v0.4.6 into 3 scaffolds, 3 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2836_v1_c1 73 512 Browse 30 5049 5374094 1.00
Klebsiella pneumoniae
57.42 Non-mobilizable - - - - - - - - CP007734 0.23011000 1586
AI2836_v1_c2 73 512 Browse 36 259 251867 1.73
Klebsiella pneumoniae
53.58 Non-mobilizable IncFII, IncFIB 000107__CP014778_00094, 000113__CP022035, 000097__NC_025166_00051, 000130__CP023489 - - MPF_F NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_021502_00131, NC_019389_00080, NC_023905_00125 - - JN233704 0.00997914 767
AI2836_v1_c3 73 512 Browse 2 16 13636 6.05
Klebsiella pneumoniae
53.70 Mobilizable ColRNAI_rep_cluster_1857 000003__NC_002119_00001 MOBC NC_009793_00003 - - - - JN247853 0.00002383 762