Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Puerta del Mar (Cádiz)
Hospital Admission Unit Nephrology
Patient Sex M
Patient Age 34
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC-3
MLST 512:gapA(54), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(79)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 16 R R
CEF >128 R R
AZT >128 R R
MEM 128 R R
IMI 32 R R
IMI-RELE ≤0.25 S S
ERT >128 R R
FOSFO 64 S R
GENTA 1 S S
TOBRA 32 R R
AMK 32 I R
CIP 128 R R
COLIS 4 NWT R
AI2627_v1
AI2627_v1

Sample 68 was assembled with Unicycler_v0.4.6 into 9 scaffolds, 2 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2627_v1_c1 68 512 Browse 30 5055 5378100 1.00
Klebsiella pneumoniae
57.41 Non-mobilizable - - - - - - - - CP007734 0.23011000 1586
AI2627_v1_c2 68 512 Browse 36 244 238033 1.80
Klebsiella pneumoniae
53.40 Non-mobilizable IncFII, IncFIB 000107__CP014778_00094, 000113__CP022035, 000097__NC_025166_00051, 000130__CP023489 - - MPF_F NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_021502_00131, NC_019389_00080, NC_023905_00125 - - JN233704 0.01035620 767
AI2627_v1_c3 68 512 Browse 2 15 13636 2.41
Klebsiella pneumoniae
53.70 Mobilizable ColRNAI_rep_cluster_1857 000003__NC_002119_00001 MOBC NC_009793_00003 - - - - JN247853 0.00000000 762
AI2627_v1_c4 68 512 Browse 0 5 4850 1.53
Klebsiella pneumoniae
56.74 Non-mobilizable - - - - - - - - CP011630 0.09498130 1227
AI2627_v1_c5 68 512 Browse 0 3 3611 1.72
Klebsiella pneumoniae
56.99 Non-mobilizable - - - - - - - - CP006658 0.06263250 765
AI2627_v1_c6 68 512 Browse 0 1 1195 1.66
Enterobacter kobei, Klebsiella pneumoniae
53.56 Non-mobilizable - - - - - - - - MF543359 0.07516810 721
AI2627_v1_c7 68 512 Browse 0 1 639 1.72
Citrobacter farmeri, Escherichia coli, Klebsiella pneumoniae
51.02 Non-mobilizable - - - - - - - - CP008932 0.19173100 1226
AI2627_v1_c8 68 512 Browse 0 0 415 1.53
Klebsiella pneumoniae
47.95 Non-mobilizable - - - - - - - - CP011630 0.18676100 1227
AI2627_v1_c9 68 512 Browse 0 0 152 1.63
Citrobacter farmeri, Escherichia coli, Klebsiella pneumoniae, Raoultella electrica, Raoultella ornithinolytica
59.87 Non-mobilizable - - - - - - - - CP020852 0.21089700 1092