Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Arquitecto Marcide (Ferrol)
Hospital Admission Unit Emergencies
Patient Sex F
Patient Age 81
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) OXA-48
MLST 168:dnaA(59), fusA(40), gyrB(81), leuS(9), pyrG(79), rplB(37), rpoB(38)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 8 R R
CAZ 128 R R
CAZ-AVI 1 S S
CEF 4 SDD I
AZT 2 S I
MEM 1 S S
IMI 0.25 S S
IMI-RELE 0.25 S S
ERT 16 R R
FOSFO None None None
GENTA 0.25 S S
TOBRA 0.25 S S
AMK 2 S S
CIP 2 R R
COLIS 0.25 WT S
AN2364_v1
AN2364_v1

Sample 499 was assembled with Unicycler_v0.4.6 into 6 scaffolds, 6 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AN2364_v1_c1 499 168 Browse 25 4444 4783994 1.00
Enterobacter hormaechei
55.23 Non-mobilizable - - - - - - - - CP016838 0.18226900 430
AN2364_v1_c2 499 168 Browse 1 137 119300 2.12
Enterobacter hormaechei
51.63 Mobilizable - - - - - - MOB_unknown NC_019125 CP021898 0.03844950 1109
AN2364_v1_c3 499 168 Browse 8 80 64579 2.90
Klebsiella pneumoniae
52.35 Conjugative IncN 000155__CP018649 MOBF NC_015599_00019 MPF_T NC_009131_00030, NC_011617_00041, NC_014368_00014, NC_007682_00044, NC_008612_00190, NC_022375_00024 MOBF NZ_CP016498 KJ440075 0.00873204 933
AN2364_v1_c4 499 168 Browse 1 78 61830 3.24
Klebsiella pneumoniae
51.26 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - KX636096 0.00011950 681
AN2364_v1_c5 499 168 Browse 0 5 4665 42.70
Escherichia coli
51.10 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006, NC_013090_00004 - - MOBP CP008720 AY589571 0.00221642 155
AN2364_v1_c6 499 168 Browse 0 5 3875 48.87
Enterobacter hormaechei
55.56 Mobilizable ColRNAI_rep_cluster_1987 000020__CP023920 MOBP NC_011404_00002 - - MOBP NZ_HG941720 EF088686 0.02951790 102