Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Arquitecto Marcide (Ferrol)
Hospital Admission Unit Surgery
Patient Sex M
Patient Age 81
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation anal-rectal
Infection or Colonization C
Outbreak None
Genus/Species
Klebsiella oxytoca
Carbapenamase type(s) OXA-48
MLST 328:gapA(1), infB(3), mdh(13), pgi(24), phoE(97), rpoB(10), tonB(80)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper 256 R R
P/T 256 R R
CTX 0.25 S S
CAZ ≤0.12 S S
CAZ-AVI ≤0.12 S S
CEF 0.25 S S
AZT 0.5 S S
MEM 0.25 S S
IMI 0.5 S S
IMI-RELE 0.25 S S
ERT 2 R R
FOSFO <32 S S
GENTA 0.5 S S
TOBRA 0.5 S S
AMK 2 S S
CIP 0.06 S S
COLIS 1 WT S
AN2363_v1
AN2363_v1

Sample 498 was assembled with Unicycler_v0.4.6 into 3 scaffolds, 3 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AN2363_v1_c1 498 328 Browse 28 5182 5699169 1.00
Klebsiella oxytoca
55.24 Non-mobilizable - - - - - - - - CP003027 0.26302200 3557
AN2363_v1_c2 498 328 Browse 1 81 61830 3.45
Klebsiella pneumoniae
51.26 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - KX636096 0.00011950 681
AN2363_v1_c3 498 328 Browse 0 5 4665 19.11
Escherichia coli
51.10 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006, NC_013090_00004 - - MOBP CP008720 AY589571 0.00224371 155