Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Lucus Augusti (Lugo)
Hospital Admission Unit Emergencies
Patient Sex M
Patient Age 90
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) Negative
MLST 15:gapA(1), infB(1), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(1)
EDTA Assay (if any) Should have OXA-48
PCR Result (if any) OXA-48 negative
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 2 S S
CTX 64 R R
CAZ 16 R R
CAZ-AVI ≤0.12 S S
CEF 32 R R
AZT 16 R R
MEM ≤0.12 S S
IMI 0.25 S S
IMI-RELE 0.25 S S
ERT 0.12 S S
FOSFO >256 R R
GENTA 0.5 S S
TOBRA 0.5 S S
AMK 2 S S
CIP 32 R R
COLIS <0.06 WT S
AN2354_v1
AN2354_v1

Sample 489 was assembled with Unicycler_v0.4.6 into 2 scaffolds, 2 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AN2354_v1_c1 489 15 Browse 34 4770 5205263 1.00
Klebsiella pneumoniae
57.32 Non-mobilizable - - - - MPF_T NC_010726_00014, NC_005814_00013, NC_010726_00011, NC_013284_00016 - - CP015754 0.21089700 1583
AN2354_v1_c2 489 15 Browse 17 184 192324 0.72
Klebsiella pneumoniae
52.31 Conjugative IncFII, IncFIB 000107__CP014778_00094, 000113__CP022035, 000128__CP023916 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_014312_00141, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_019389_00068, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019389_00080 - - CP021710 0.00715996 767