Collection SERGAS
Isolation Year 2017
Isolation Location Complejo Hospitalario Universitario de A Coruña
Hospital Admission Unit Urology
Patient Sex M
Patient Age 86
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) Negative
MLST 307:gapA(4), infB(1), mdh(2), pgi(52), phoE(1), rpoB(1), tonB(7)
EDTA Assay (if any) It could have an OXA-48
PCR Result (if any) OXA-48 negative
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 128 R R
CTX >128 R R
CAZ 64 R R
CAZ-AVI 0.5 S S
CEF >128 R R
AZT >128 R R
MEM 1 S S
IMI 0.5 S S
IMI-RELE ≤0.12 S S
ERT 4 R R
FOSFO 256 R R
GENTA 16 R R
TOBRA 16 R R
AMK 4 S S
CIP >128 R R
COLIS <0.06 WT S
AN2347_v1
AN2347_v1

Sample 482 was assembled with Unicycler_v0.4.6 into 2 scaffolds, 2 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AN2347_v1_c1 482 307 Browse 31 4868 5300879 1.00
Klebsiella pneumoniae
57.48 Non-mobilizable - - - - - - - - CP007734 0.21953100 1586
AN2347_v1_c2 482 307 Browse 31 193 193601 0.77
Klebsiella pneumoniae
51.99 Conjugative IncFII, IncFIB 000124__KP125893_00142, 000107__CP014778_00094 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_011281_00082, NC_022609_00081, NC_014312_00128, NC_019389_00068, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019155_00032 - - KY271404 0.00861543 770