Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Reina Sofía (Córdoba)
Hospital Admission Unit Oncology
Patient Sex M
Patient Age 74
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation blood culture
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC-3
MLST 512:gapA(54), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(79)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 1 S S
CEF >128 R R
AZT >128 R R
MEM 32 R R
IMI 8 R R
IMI-RELE ≤0.12 S S
ERT >128 R R
FOSFO 256 R R
GENTA ≤0.25 S S
TOBRA 16 R R
AMK 8 S S
CIP 128 R R
COLIS <0.06 WT S
AI2811_v1
AI2811_v1

Sample 469 was assembled with Unicycler_v0.4.6 into 6 scaffolds, 6 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2811_v1_c1 469 512 Browse 30 5047 5375502 1.00
Klebsiella pneumoniae
57.41 Non-mobilizable - - - - - - - - CP007734 0.23011000 1586
AI2811_v1_c2 469 512 Browse 9 123 117590 2.49
Klebsiella pneumoniae
53.96 Conjugative IncFII, IncFIB 000113__CP022035, 000097__NC_025166_00051, 000130__CP023489 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_019389_00068, NC_023332_00154, NC_014312_00118, NC_021502_00131, NC_019389_00080, NC_023905_00125 - - KF874498 0.00279888 1220
AI2811_v1_c3 469 512 Browse 1 50 43380 3.03
Klebsiella pneumoniae
46.83 Conjugative IncX3 000221__NC_025130_00012 MOBP NC_020552_00059 MPF_T NC_023277_00163, NC_019157_00029, NC_019157_00030, NC_019083_00030, NC_017624_00009 - - JN247852 0.00009552 664
AI2811_v1_c4 469 512 Browse 2 15 13636 7.28
Klebsiella pneumoniae
53.70 Mobilizable ColRNAI_rep_cluster_1857 000003__NC_002119_00001 MOBC NC_009793_00003 - - - - JN247853 0.00000000 762
AI2811_v1_c5 469 512 Browse 0 3 3991 0.32
Klebsiella pneumoniae
44.35 Non-mobilizable ColRNAI_rep_cluster_1987, rep_cluster_2050 001473__CP024541, 000019__CP000651_00005 - - - - - - CP012558 0.08624910 195
AI2811_v1_c6 469 512 Browse 0 4 3223 0.54
Citrobacter freundii, Enterobacter hormaechei, Klebsiella michiganensis, Klebsiella pneumoniae, Salmonella enterica
56.35 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006, NC_001898_00003 - - MOBP CP018941 CP016867 0.00023990 133