Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Reina Sofía (Córdoba)
Hospital Admission Unit Emergencies
Patient Sex F
Patient Age 65
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation peritoneal fluid
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC-3
MLST 512:gapA(54), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(79)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 4 S S
CEF >128 R R
AZT >128 R R
MEM 32 R R
IMI 8 R R
IMI-RELE ≤0.12 S S
ERT 32 R R
FOSFO 64 S R
GENTA 1 S S
TOBRA 32 R R
AMK 16 S R
CIP >128 R R
COLIS <0.06 WT S
AI2809_v1
AI2809_v1

Sample 467 was assembled with Unicycler_v0.4.6 into 4 scaffolds, 4 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2809_v1_c1 467 512 Browse 30 5062 5393350 1.00
Klebsiella pneumoniae
57.40 Non-mobilizable - - - - - - - - CP008932 0.20360400 1226
AI2809_v1_c2 467 512 Browse 9 123 117591 2.09
Klebsiella pneumoniae
53.96 Conjugative IncFII, IncFIB 000113__CP022035, 000097__NC_025166_00051, 000130__CP023489 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_019389_00068, NC_023332_00154, NC_014312_00118, NC_021502_00131, NC_019389_00080, NC_023905_00125 - - KF874498 0.00282712 1220
AI2809_v1_c3 467 512 Browse 1 50 44580 3.22
Klebsiella pneumoniae
47.01 Conjugative IncX3 000221__NC_025130_00012 MOBP NC_020552_00059 MPF_T NC_023277_00163, NC_019157_00029, NC_019157_00030, NC_019083_00030, NC_017624_00009 - - CP019775 0.00053260 664
AI2809_v1_c4 467 512 Browse 2 15 13636 7.88
Klebsiella pneumoniae
53.70 Mobilizable ColRNAI_rep_cluster_1857 000003__NC_002119_00001 MOBC NC_009793_00003 - - - - JN247853 0.00000000 762