Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Reina Sofía (Córdoba)
Hospital Admission Unit Internal medicine
Patient Sex M
Patient Age 52
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC
MLST 512:gapA(54), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(79)
EDTA Assay (if any) Probable KPC
PCR Result (if any) KPC positive x2
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 8 S S
CEF >128 R R
AZT >128 R R
MEM 128 R R
IMI 32 R R
IMI-RELE ≤0.12 S S
ERT >128 R R
FOSFO <32 S S
GENTA 0.5 S S
TOBRA 1 S S
AMK 2 S S
CIP 128 R R
COLIS 16 NWT R
AI2807_v1
AI2807_v1

Sample 464 was assembled with Unicycler_v0.4.6 into 2 scaffolds, 2 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2807_v1_c1 464 512 Browse 30 5058 5386364 1.00
Klebsiella pneumoniae
57.44 Non-mobilizable - - - - - - - - CP008932 0.20360400 1226
AI2807_v1_c2 464 512 Browse 14 136 137006 1.92
Klebsiella pneumoniae
54.25 Conjugative IncFII, IncFIB 000113__CP022035, 000097__NC_025166_00051, 000130__CP023489 MOBF NC_021231_00058 MPF_T NC_021502_00150 - - CP011990 0.02278380 767