Collection SERGAS
Isolation Year 2017
Isolation Location Complejo Asistencial Universitario de Salamanca (Salamanca)
Hospital Admission Unit Hematology
Patient Sex M
Patient Age 77
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation catheter
Infection or Colonization I
Outbreak None
Genus/Species
Serratia marcescens
Carbapenamase type(s) VIM-1
MLST 0:
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper 16 S I
P/T 16 S ATU
CTX 128 R R
CAZ 128 R R
CAZ-AVI 128 R R
CEF 8 SDD R
AZT 1 S S
MEM ≤0.25 S S
IMI 0.5 S S
IMI-RELE 0.5 S S
ERT 1 I R
FOSFO 64 S R
GENTA 1 S S
TOBRA 8 I R
AMK 4 S S
CIP 0.5 I ATU
COLIS >128 NWT R
AI2618_v1
AI2618_v1

Sample 49 was assembled with Unicycler_v0.4.6 into 7 scaffolds, 7 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2618_v1_c1 49 0 Browse 13 4970 5429141 1.00
Serratia marcescens
58.90 Conjugative IncP 000164__NC_022344_00310 MOBP NC_022344_00316 MPF_T NC_022344_00321, NC_022344_00326, NC_022344_00330, NC_015727_00490 - - CP017294 0.19173100 3040
AI2618_v1_c2 49 0 Browse 8 89 68707 3.18
Klebsiella pneumoniae
51.99 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - KU159085 0.00617965 681
AI2618_v1_c3 49 0 Browse 0 24 19482 16.41
Enterobacter cloacae
57.89 Mobilizable - - MOBP NC_017723_00002 - - - - CP017933 0.03492680 111
AI2618_v1_c4 49 0 Browse 0 13 12879 9.85
Escherichia coli
58.72 Non-mobilizable - - - - - - - - KM107845 0.05414900 4520
AI2618_v1_c5 49 0 Browse 0 5 4783 13.15
Enterobacter roggenkampii
52.50 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006, NC_011404_00002 - - MOBP CP008720 CP012164 0.01594300 100
AI2618_v1_c6 49 0 Browse 0 1 3696 6.35
Serratia marcescens
47.32 Non-mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - - - CP003960 0.12214000 3203
AI2618_v1_c7 49 0 Browse 0 4 3223 18.79
Citrobacter freundii, Enterobacter hormaechei, Klebsiella michiganensis, Klebsiella pneumoniae, Salmonella enterica
56.28 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006, NC_013090_00004 - - MOBP CP018941 CP011569 0.00028831 133