Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Vall d'Hebron (Barcelona)
Hospital Admission Unit Burn unit
Patient Sex M
Patient Age 43
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation wound
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) VIM-1
MLST 78:dnaA(8), fusA(9), gyrB(6), leuS(9), pyrG(9), rplB(6), rpoB(8)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI >128 R R
CEF >128 R R
AZT >128 R R
MEM 4 R I
IMI 2 I S
IMI-RELE 2 I S
ERT 8 R R
FOSFO 64 S R
GENTA 8 I R
TOBRA 16 R R
AMK 4 S S
CIP 16 R R
COLIS 0.12 WT S
AI2804_v2
AI2804_v2

Sample 460 was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2804_v2_c1 460 78 Browse 27 4369 4720661 1.00 None 55.15 Non-mobilizable - - - - - - - - CP008824 0.18226900 966
AI2804_v2_c2 460 78 Browse 15 314 294830 1.17 None 47.07 Conjugative rep_cluster_1088, IncH 000139__NC_012555_00001, 000338__NC_021819 MOBH NC_012555_00231 MPF_F NC_005211_00200, NC_005211_00207, NC_005211_00005, NC_009838_00006, NC_005211_00012, NC_021845_00017, NC_005211_00030 MOBH NC_017484 CP008825 0.00781808 429
AI2804_v2_c3 460 78 Browse 5 230 204760 1.46 None 52.80 Conjugative IncFII, IncFIB 000135__NC_014107_00001, 000108__NC_014107_00054 MOBF NC_014107_00160 MPF_F NC_014107_00125, NC_014107_00126, NC_014107_00127, NC_009425_00108, NC_014107_00135, NC_014107_00137, NC_014107_00139, NC_014107_00145, NC_014107_00146, NC_014107_00154, NC_014107_00155, NC_014107_00159, NC_014107_00147 - - CP012169 0.00260250 708
AI2804_v2_c4 460 78 Browse 3 140 120105 1.45 None 51.71 Non-mobilizable IncFIB 000104__CP010386_00052 - - - - - - CP021897 0.00162709 86
AI2804_v2_c5 460 78 Browse 0 5 4544 12.85 None 51.61 Mobilizable - - MOBP NC_017723_00002 - - - - FJ696405 0.11019300 330