Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Vall d'Hebron (Barcelona)
Hospital Admission Unit Hematology
Patient Sex M
Patient Age 74
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) OXA-48
MLST 628:gapA(2), infB(60), mdh(11), pgi(1), phoE(4), rpoB(8), tonB(24)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 256 R R
CTX 16 R R
CAZ 2 S I
CAZ-AVI 0.5 S S
CEF 0.5 S S
AZT 0.5 S S
MEM 2 I S
IMI 2 I S
IMI-RELE 2 I S
ERT 32 R R
FOSFO 256 R R
GENTA 0.5 S S
TOBRA 0.5 S S
AMK 1 S S
CIP <0.06 S S
COLIS 0.12 WT S
AI2803_v1
AI2803_v1

Sample 459 was assembled with Unicycler_v0.4.6 into 3 scaffolds, 3 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2803_v1_c1 459 628 Browse 28 4919 5345450 1.00
Klebsiella pneumoniae
57.48 Non-mobilizable - - - - - - - - CP007734 0.21953100 1586
AI2803_v1_c2 459 628 Browse 1 165 158298 1.72
Klebsiella pneumoniae
50.87 Conjugative IncFII, IncFIB 000107__CP014778_00094, 000126__FO834904 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_019389_00068, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019389_00080, NC_019155_00032 - - CP015754 0.04058540 1583
AI2803_v1_c3 459 628 Browse 1 86 69575 3.09
Klebsiella pneumoniae
50.47 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00265838 681