Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Vall d'Hebron (Barcelona)
Hospital Admission Unit Internal medicine
Patient Sex M
Patient Age 61
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) VIM-1
MLST 24:dnaA(23), fusA(15), gyrB(23), leuS(16), pyrG(28), rplB(11), rpoB(11)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI >128 R R
CEF >128 R R
AZT 4 S I
MEM 2 I S
IMI 2 I S
IMI-RELE 2 I S
ERT 32 R R
FOSFO >256 R R
GENTA 8 I R
TOBRA 64 R R
AMK 2 S S
CIP 1 R R
COLIS >128 NWT R
AI2802_v1
AI2802_v1

Sample 458 was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2802_v1_c1 458 24 Browse 29 4924 5149560 1.00
Kosakonia radicincitans
55.60 Conjugative IncP 000164__NC_022344_00310 MOBP NC_022344_00316 MPF_T NC_022344_00321, NC_022344_00326, NC_022344_00330, NC_008757_00079 - - CP008824 0.17817300 966
AI2802_v1_c2 458 24 Browse 29 472 439447 2.18
Enterobacter cloacae
49.27 Conjugative IncFII, IncFIB, rep_cluster_1088, IncH 000139__NC_012555_00001, 000338__NC_021819, 000135__NC_014107_00001, 000108__NC_014107_00054 MOBF, MOBH NC_012555_00231, NC_014107_00160 MPF_F NC_005211_00200, NC_005211_00207, NC_005211_00005, NC_009838_00006, NC_005211_00012, NC_021845_00017, NC_005211_00030, NC_014107_00125, NC_014107_00126, NC_014107_00127, NC_009425_00108, NC_014107_00135, NC_014107_00137, NC_014107_00139, NC_014107_00145, NC_014107_00146, NC_014107_00154, NC_014107_00155, NC_014107_00159, NC_014107_00147 MOBH NC_017484 CP008825 0.01880530 429
AI2802_v1_c3 458 24 Browse 0 15 14561 13.21
Escherichia coli
55.69 Non-mobilizable - - - - - - - - CP012488 0.08249890 1875
AI2802_v1_c4 458 24 Browse 0 6 4938 19.23
Enterobacter hormaechei
54.88 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_021293_00005, NC_001848_00006 - - MOBP HQ328804 CP011049 0.00016755 98
AI2802_v1_c5 458 24 Browse 0 4 4665 23.97
Enterobacter roggenkampii
51.19 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006, NC_013090_00004 - - MOBP CP008720 AY589571 0.00240836 155