Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Vall d'Hebron (Barcelona)
Hospital Admission Unit Burn unit
Patient Sex M
Patient Age 62
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation sputum
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) VIM-1
MLST 78:dnaA(8), fusA(9), gyrB(6), leuS(9), pyrG(9), rplB(6), rpoB(8)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI >128 R R
CEF >128 R R
AZT >128 R R
MEM 2 I S
IMI 2 I S
IMI-RELE 1 S S
ERT 16 R R
FOSFO 32 S S
GENTA 4 S R
TOBRA 16 R R
AMK 4 S S
CIP 16 R R
COLIS 0.12 WT S
AI2798_v1
AI2798_v1

Sample 452 was assembled with Unicycler_v0.4.6 into 4 scaffolds, 4 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2798_v1_c1 452 78 Browse 29 4365 4720539 1.00
Enterobacter cloacae
55.15 Non-mobilizable - - - - - - - - CP008824 0.18226900 966
AI2798_v1_c2 452 78 Browse 20 314 294830 1.01
Citrobacter freundii
47.07 Conjugative rep_cluster_1088, IncH 000139__NC_012555_00001, 000338__NC_021819 MOBH NC_012555_00231 MPF_F NC_005211_00200, NC_005211_00207, NC_005211_00005, NC_009838_00006, NC_005211_00012, NC_021845_00017, NC_005211_00030 MOBH NC_017484 CP008825 0.00781808 429
AI2798_v1_c3 452 78 Browse 4 140 120105 1.30
Enterobacter cloacae
51.71 Non-mobilizable IncFIB 000104__CP010386_00052 - - - - - - CP021897 0.00162709 86
AI2798_v1_c4 452 78 Browse 0 6 4544 10.57
Escherichia coli
51.61 Mobilizable - - MOBP NC_017723_00002 - - - - FJ696405 0.11019300 330