Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Vall d'Hebron (Barcelona)
Hospital Admission Unit Oncology
Patient Sex M
Patient Age 60
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) OXA-48
MLST 1380:dnaA(53), fusA(35), gyrB(20), leuS(451), pyrG(45), rplB(4), rpoB(6)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 1 S S
CEF 8 SDD R
AZT 128 R R
MEM 0.5 S S
IMI 0.25 S S
IMI-RELE ≤0.12 S S
ERT 8 R R
FOSFO <32 S S
GENTA 0.5 S S
TOBRA 0.5 S S
AMK 0.5 S S
CIP 1 R R
COLIS 0.12 WT S
AI2796_v1
AI2796_v1

Sample 449 was assembled with Unicycler_v0.4.6 into 6 scaffolds, 6 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2796_v1_c1 449 1380 Browse 26 4704 4988649 1.00
Enterobacter hormaechei
55.17 Non-mobilizable - - - - MPF_F NC_014304_00056 - - CP022495 0.20360400 841
AI2796_v1_c2 449 1380 Browse 1 84 63589 2.76
Klebsiella pneumoniae
51.22 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00000000 681
AI2796_v1_c3 449 1380 Browse 5 40 35049 2.59
Klebsiella pneumoniae
55.26 Non-mobilizable IncR 000204__CP008701_00115 - - - - - - LC155908 0.02524110 731
AI2796_v1_c4 449 1380 Browse 2 4 2699 11.69
Salmonella enterica
50.39 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - MOBP CP018223 GQ374156 0.00031257 214
AI2796_v1_c5 449 1380 Browse 0 3 2495 10.42
Enterobacter hormaechei
51.46 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - MOB_unknown NC_017722 CP010389 0.00095658 215
AI2796_v1_c6 449 1380 Browse 0 1 2058 22.19
Escherichia coli
56.51 Non-mobilizable ColRNAI_rep_cluster_1993 000024__JX133088 - - - - - - KU302803 0.00048345 78