Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Valencia Tres cruces (Valencia)
Hospital Admission Unit Internal medicine
Patient Sex F
Patient Age 99
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) OXA-48
MLST 307:gapA(4), infB(1), mdh(2), pgi(52), phoE(1), rpoB(1), tonB(7)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 128 R R
CAZ 128 R R
CAZ-AVI 1 S S
CEF 128 R R
AZT 128 R R
MEM 0.5 S S
IMI 0.25 S S
IMI-RELE ≤0.12 S S
ERT 4 R R
FOSFO >256 R R
GENTA ≤0.25 S S
TOBRA ≤0.25 S S
AMK 0.5 S S
CIP 128 R R
COLIS <0.06 WT S
AI3069_v1
AI3069_v1

Sample 440 was assembled with Unicycler_v0.4.6 into 7 scaffolds, 4 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI3069_v1_c1 440 307 Browse 28 4970 5331370 1.00
Klebsiella pneumoniae
57.36 Non-mobilizable - - - - - - - - CP007734 0.21953100 1586
AI3069_v1_c2 440 307 Browse 9 304 302649 1.13
Klebsiella pneumoniae
47.61 Conjugative rep_cluster_1150 000430__CP020850 MOBH NC_016980_00239 MPF_F NC_016980_00240, NC_018107_00101, NC_016980_00110, NC_016980_00109, NC_016980_00099, NC_018107_00235, NC_023911_00309 - - CP015501 0.01825240 1530
AI3069_v1_c3 440 307 Browse 27 194 183065 1.42
Klebsiella pneumoniae
51.26 Conjugative ColRNAI_rep_cluster_1987, IncFII, IncFIB, rep_cluster_2050 000124__KP125893_00142, 000107__CP014778_00094, 001473__CP024541, 000019__CP000651_00005 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_014312_00141, NC_019165_00034, NC_021654_00016, NC_011281_00082, NC_022609_00081, NC_014312_00128, NC_019389_00068, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131 - - CP010390 0.00183900 770
AI3069_v1_c4 440 307 Browse 1 62 79043 0.98
Klebsiella pneumoniae
56.53 Non-mobilizable - - - - - - - - CP019447 0.29598100 1447
AI3069_v1_c5 440 307 Browse 1 84 63589 1.78
Escherichia coli, Klebsiella pneumoniae
51.22 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00000000 681
AI3069_v1_c6 440 307 Browse 0 4 3223 12.12
Klebsiella pneumoniae
56.35 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_013090_00004 - - MOBP CP018941 CP016867 0.00014350 133
AI3069_v1_c7 440 307 Browse 0 0 218 4.35
Klebsiella pneumoniae
68.81 Non-mobilizable - - - - - - - - 1.00000000