Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Valencia Tres cruces (Valencia)
Hospital Admission Unit ICU
Patient Sex M
Patient Age 64
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation BAS
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) OXA-48
MLST 11:gapA(3), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(4)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 128 R R
CAZ >128 R R
CAZ-AVI 4 S S
CEF 32 R R
AZT >128 R R
MEM 0.25 S S
IMI 0.5 S S
IMI-RELE ≤0.12 S S
ERT 2 R R
FOSFO 256 R R
GENTA ≤0.25 S S
TOBRA 0.5 S S
AMK 16 S R
CIP >128 R R
COLIS 0.12 WT S
AI2782_v5
AI2782_v5

Sample 428 was assembled with Unicycler_v0.4.6 into 6 scaffolds, 6 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2782_v5_c1 428 11 Browse 32 5134 5475056 1.00
Klebsiella pneumoniae
57.35 Non-mobilizable - - - - MPF_T NC_010726_00014, NC_005814_00013, NC_010726_00011, NC_013284_00016 - - CP015754 0.20360400 1583
AI2782_v5_c2 428 11 Browse 26 205 202191 1.42
Klebsiella pneumoniae
52.29 Conjugative IncFII, IncFIB 000107__CP014778_00094, 000113__CP022035, 000132__HG969996 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019389_00080, NC_019155_00032, NC_021654_00004 - - CP020109 0.00680395 769
AI2782_v5_c3 428 11 Browse 1 83 63589 5.31
Klebsiella pneumoniae
51.22 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00004769 681
AI2782_v5_c4 428 11 Browse 2 32 31026 2.24
Klebsiella pneumoniae
55.07 Mobilizable IncR 000204__CP008701_00115 MOBP NC_021576_00050 - - - - CP020073 0.00752278 730
AI2782_v5_c5 428 11 Browse 0 11 9294 7.78
Klebsiella pneumoniae
55.15 Mobilizable ColRNAI_rep_cluster_1857 000003__NC_002119_00001 MOBC NC_009793_00003 - - - - MF150124 0.00002383 762
AI2782_v5_c6 428 11 Browse 0 9 6910 12.79
Enterobacter hormaechei
56.57 Non-mobilizable rep_cluster_1785 001212__CP010366_00001 - - - - - - CP010366 0.01771220 814