Collection SERGAS
Isolation Year 2017
Isolation Location Complejo Asistencial Universitario de Salamanca (Salamanca)
Hospital Admission Unit Hepatobiliar surgery
Patient Sex M
Patient Age 56
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation peritoneal fluid
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella oxytoca
Carbapenamase type(s) KPC-2
MLST 324:gapA(32), infB(5), mdh(7), pgi(61), phoE(24), rpoB(6), tonB(78)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 2 S S
CEF >128 R R
AZT >128 R R
MEM 2 I S
IMI 2 I S
IMI-RELE ≤0.12 S S
ERT 32 R R
FOSFO <32 S S
GENTA 128 R R
TOBRA 256 R R
AMK 32 I R
CIP 0.5 I ATU
COLIS <0.06 WT S
AI2614_v1
AI2614_v1

Sample 45 was assembled with Unicycler_v0.4.6 into 6 scaffolds, 6 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2614_v1_c1 45 324 Browse 30 5383 5905790 1.00
Klebsiella oxytoca
56.18 Conjugative IncP 000164__NC_022344_00310 MOBP NC_022344_00316 MPF_T NC_022344_00321, NC_022344_00326, NC_022344_00330, NC_015727_00490 - - CP009869 0.23011000 840
AI2614_v1_c2 45 324 Browse 25 304 293564 1.38
Enterobacter hormaechei
46.90 Conjugative rep_cluster_1088, IncH 000139__NC_012555_00001, 000338__NC_021819 MOBH NC_012555_00231 MPF_F NC_005211_00200, NC_005211_00207, NC_005211_00005, NC_009838_00006, NC_005211_00012, NC_021845_00017, NC_005211_00030 MOBH NC_017484 CP008825 0.00781808 429
AI2614_v1_c3 45 324 Browse 26 235 218602 1.32
Klebsiella oxytoca
52.35 Conjugative IncFIB 000107__CP014778_00094 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_022609_00081, NC_014312_00128, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019155_00032, NC_021654_00004 - - CP018361 0.02631040 707
AI2614_v1_c4 45 324 Browse 2 49 40441 6.57
Aeromonas hydrophila
57.85 Mobilizable IncP, IncU 000172__KU578314_00001, 000210__KF623109_00045 MOBP NC_003124_00014 - - - - KU578314 0.00128842 891
AI2614_v1_c5 45 324 Browse 0 7 6641 12.02
Klebsiella pneumoniae
50.85 Non-mobilizable - - - - - - - - CP018667 0.12827000 1716
AI2614_v1_c6 45 324 Browse 0 2 2969 23.81
Escherichia coli
48.50 Non-mobilizable ColRNAI_rep_cluster_1857 000012__CP000801 - - - - - - EU092237 0.12330000 3205