Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Valencia Tres cruces (Valencia)
Hospital Admission Unit Primary care
Patient Sex M
Patient Age 77
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) NDM-23
MLST 437:gapA(3), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(31)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI >128 R R
CEF 128 R R
AZT >128 R R
MEM 1 S S
IMI 0.5 S S
IMI-RELE 0.25 S S
ERT >128 R R
FOSFO <32 S S
GENTA ≤0.25 S S
TOBRA 8 I R
AMK 32 I R
CIP >128 R R
COLIS 0.5 WT S
AI2779_v1
AI2779_v1

Sample 424 was assembled with Unicycler_v0.4.6 into 4 scaffolds, 4 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2779_v1_c1 424 437 Browse 31 4895 5277320 1.00
Klebsiella pneumoniae
57.60 Non-mobilizable - - - - MPF_T NC_010726_00014, NC_005814_00013, NC_010726_00011, NC_013284_00016 - - CP015754 0.21089700 1583
AI2779_v1_c2 424 437 Browse 24 104 87254 2.91
Klebsiella pneumoniae
53.54 Non-mobilizable rep_cluster_1418 000759__NC_013950_00034 - - - - - - CP016925 0.01126430 1222
AI2779_v1_c3 424 437 Browse 0 8 5568 9.12
Klebsiella pneumoniae
50.02 Mobilizable - - MOBP NC_017723_00002 - - - - FJ696405 0.12827000 330
AI2779_v1_c4 424 437 Browse 0 3 3479 4.28
Klebsiella pneumoniae
45.65 Non-mobilizable ColRNAI_rep_cluster_1987, rep_cluster_2050 001473__CP024541, 000019__CP000651_00005 - - - - - - CP000652 0.00031257 193