Collection SERGAS
Isolation Year 2017
Isolation Location Clínica Universitaria de Navarra (Navarra)
Hospital Admission Unit Hematology
Patient Sex M
Patient Age 62
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation feces
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) IMP-8
MLST 96:dnaA(57), fusA(39), gyrB(49), leuS(57), pyrG(49), rplB(12), rpoB(20)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper 32 I R
P/T 32 I R
CTX >128 R R
CAZ >256 R R
CAZ-AVI 256 R R
CEF 128 R R
AZT >128 R R
MEM ≤0.12 S S
IMI ≤0.12 S S
IMI-RELE ≤0.12 S S
ERT 2 R R
FOSFO 64 S R
GENTA 8 I R
TOBRA 16 R R
AMK 4 S S
CIP 128 R R
COLIS 16 NWT R
AI2992_v5
AI2992_v5

Sample 397 was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2992_v5_c1 397 96 Browse 46 4290 4733345 1.00
Enterobacter roggenkampii
56.04 Non-mobilizable - - - - - - - - CP008824 0.17817300 966
AI2992_v5_c2 397 96 Browse 20 318 311068 0.90
Enterobacter hormaechei
47.15 Conjugative rep_cluster_1088, IncH 000139__NC_012555_00001, 000338__NC_021819 MOBH NC_012555_00231 MPF_F NC_005211_00200, NC_005211_00207, NC_005211_00005, NC_005211_00012, NC_021845_00017, NC_005211_00030 MOBH NC_017484 KX810825 0.01078360 429
AI2992_v5_c3 397 96 Browse 4 6 5825 11.30
Enterobacter hormaechei
51.09 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - MOBP CP001388 FJ696404 0.06510850 897
AI2992_v5_c4 397 96 Browse 0 6 3906 5.60
Serratia marcescens
56.14 Mobilizable ColRNAI_rep_cluster_1987 000020__CP023920 MOBP NC_001848_00006, NC_011404_00002 - - MOBP CP018941 JQ319768 0.07907110 607
AI2992_v5_c5 397 96 Browse 0 4 3223 9.24
Klebsiella pneumoniae
56.35 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_013090_00004 - - MOBP CP018941 CP016867 0.00021574 133