Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Marqués de Valdecilla (Santander)
Hospital Admission Unit None
Patient Sex F
Patient Age 89
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) VIM-1
MLST 114:dnaA(53), fusA(35), gyrB(20), leuS(44), pyrG(45), rplB(4), rpoB(6)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 128 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI >128 R R
CEF >128 R R
AZT >128 R R
MEM 4 R I
IMI 4 R I
IMI-RELE 4 R R
ERT 2 R R
FOSFO 256 R R
GENTA 32 R R
TOBRA 16 R R
AMK 4 S S
CIP >128 R R
COLIS <0.06 WT S
AI2759_v1
AI2759_v1

Sample 392 was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2759_v1_c1 392 114 Browse 31 4482 4797313 1.00
Enterobacter hormaechei
55.20 Non-mobilizable - - - - - - - - DQ517526 0.21089700 430
AI2759_v1_c2 392 114 Browse 16 329 305034 1.24
Enterobacter sp.
46.87 Conjugative rep_cluster_1088, IncH 000139__NC_012555_00001, 000338__NC_021819 MOBH NC_012555_00231 MPF_F NC_005211_00200, NC_005211_00207, NC_005211_00005, NC_009838_00006, NC_005211_00012, NC_021845_00017, NC_005211_00030 MOBH NC_017484 LK056646 0.00048345 429
AI2759_v1_c3 392 114 Browse 11 97 73676 2.88
Klebsiella pneumoniae
51.36 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP018342 0.00755945 681
AI2759_v1_c4 392 114 Browse 0 17 11419 2.23
Klebsiella pneumoniae
39.86 Non-mobilizable IncX1 000216__CP009767_00121 - - - - - - JN935897 0.05211700 44
AI2759_v1_c5 392 114 Browse 0 3 2496 8.43
Enterobacter hormaechei
51.52 Mobilizable ColRNAI_rep_cluster_1857 000009__CP017845 - - - - MOBP, MOB_unknown NC_017722, CP001388 CP010389 0.02777750 215