Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Marqués de Valdecilla (Santander)
Hospital Admission Unit None
Patient Sex F
Patient Age 48
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) IMP-13
MLST 182:dnaA(49), fusA(20), gyrB(19), leuS(44), pyrG(90), rplB(24), rpoB(32)
EDTA Assay (if any) None
PCR Result (if any) OXA-48 negative, IMP positive
Agent MIC CLSI EUCAST
Piper 16 S I
P/T 1 S S
CTX >128 R R
CAZ 128 R R
CAZ-AVI 32 R R
CEF 128 R R
AZT 128 R R
MEM ≤0.12 S S
IMI ≤0.12 S S
IMI-RELE ≤0.12 S S
ERT 2 R R
FOSFO 128 I R
GENTA 2 S S
TOBRA 4 S R
AMK 2 S S
CIP >128 R R
COLIS <0.06 WT S
AI2747_v1
AI2747_v1

Sample 378 was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2747_v1_c1 378 182 Browse 34 4434 4717191 1.00
Enterobacter cloacae
55.47 Conjugative IncP 000164__NC_022344_00310 MOBP NC_022344_00316 MPF_T NC_022344_00321, NC_022344_00326, NC_022344_00330, NC_008757_00079 - - KP899803 0.19729200 840
AI2747_v1_c2 378 182 Browse 23 353 338774 1.60
Enterobacter cloacae
47.04 Conjugative rep_cluster_1088, IncH 000139__NC_012555_00001, 000338__NC_021819 MOBH NC_012555_00231 MPF_F NC_005211_00200, NC_005211_00207, NC_005211_00005, NC_009838_00006, NC_005211_00012, NC_021845_00017, NC_005211_00030 MOBH NC_017484 LN794248 0.00547692 429
AI2747_v1_c3 378 182 Browse 23 229 211074 1.94
Enterobacter cloacae
51.58 Conjugative IncFII, IncFIB 000135__NC_014107_00001, 000108__NC_014107_00054 MOBF NC_014107_00160 MPF_F NC_014107_00125, NC_014107_00126, NC_014107_00127, NC_009425_00108, NC_014107_00135, NC_014107_00137, NC_014107_00139, NC_014107_00145, NC_014107_00146, NC_014107_00154, NC_014107_00155, NC_014107_00159, NC_014107_00147 - - CP008907 0.06158390 809
AI2747_v1_c4 378 182 Browse 1 84 74916 3.46
Escherichia coli
50.67 Conjugative IncFII, IncFIIA 000136__AP014877_00014, 000121__CP024805 MOBF NC_017627_00068 MPF_F NC_010719_00097, NC_019037_00027, NC_017639_00100, NC_007675_00027, NC_013437_00116, NC_017639_00094, NC_019094_00090, NC_010409_00124, NC_022651_00077, 08-5333_00200, NC_019094_00068, NC_010719_00096 MOBF CP017721 KJ484631 0.01306380 546
AI2747_v1_c5 378 182 Browse 11 41 35317 5.39
Pseudomonas aeruginosa
59.55 Mobilizable IncP 000169__CP016835_00012 MOBP NC_009739_00028 - - - - AM778842 0.01450760 1729