Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Marqués de Valdecilla (Santander)
Hospital Admission Unit None
Patient Sex F
Patient Age 83
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation biopsy
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) OXA-48
MLST 11:gapA(3), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(4)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 2 S S
CEF 128 R R
AZT >128 R R
MEM 1 S S
IMI 1 S S
IMI-RELE 0.5 S S
ERT 4 R R
FOSFO 128 I R
GENTA 8 I R
TOBRA 16 R R
AMK 2 S S
CIP >128 R R
COLIS 16 NWT R
AI2742_v1
AI2742_v1

Sample 372 was assembled with Unicycler_v0.4.6 into 4 scaffolds, 4 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2742_v1_c1 372 11 Browse 33 5066 5407185 1.00
Klebsiella pneumoniae
57.47 Conjugative IncP 000164__NC_022344_00310 MOBP NC_022344_00316 MPF_T NC_010726_00014, NC_005814_00013, NC_010726_00011, NC_013284_00016, NC_022344_00321, NC_022344_00326, NC_022344_00330, NC_008757_00079 - - CP017294 0.19173100 3040
AI2742_v1_c2 372 11 Browse 32 215 212171 1.21
Klebsiella pneumoniae
52.85 Non-mobilizable IncFII, IncFIB 000107__CP014778_00094, 000113__CP022035, 000132__HG969996 - - MPF_F NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019389_00080, NC_019155_00032, NC_021654_00004 - - CP009777 0.00274254 767
AI2742_v1_c3 372 11 Browse 12 70 66091 2.03
Citrobacter sp., Klebsiella oxytoca
50.66 Conjugative IncR 000204__CP008701_00115 MOBF, MOBP NC_015599_00019, NC_021576_00050 MPF_T NC_022375_00024 MOBF NZ_CP012928 CP006662 0.03097450 728
AI2742_v1_c4 372 11 Browse 1 84 65498 4.21
Klebsiella pneumoniae
51.43 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - KX523901 0.00011950 681