Collection CNM
Isolation Year 2015
Isolation Location Hospital Universitario Virgen de las Nieves
Hospital Admission Unit Internal medicine
Patient Sex F
Patient Age 90
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC-3
MLST 258:gapA(3), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(79)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 256 R R
CTX 32 R R
CAZ 64 R R
CAZ-AVI 1 S S
CEF 16 R R
AZT 32 R R
MEM 16 R R
IMI 16 R R
IMI-RELE 1 S S
ERT 16 R R
FOSFO 32 S S
GENTA ≤0.25 S S
TOBRA ≤0.25 S S
AMK 2 S S
CIP 64 R R
COLIS <0.06 WT S
AI2723_v1
AI2723_v1

Sample 366-B was assembled with Unicycler_v0.4.6 into 3 scaffolds, 3 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2723_v1_c1 366-B 258 Browse 33 5031 5373054 1.00
Klebsiella pneumoniae
57.42 Non-mobilizable - - - - - - - - CP014649 0.20360400 769
AI2723_v1_c2 366-B 258 Browse 34 293 286263 1.29
Klebsiella pneumoniae
53.34 Conjugative IncFII, IncFIB 000107__CP014778_00094, 000113__CP022035, 000132__HG969996 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_023332_00154, NC_014312_00118, NC_021502_00131, NC_019389_00080, NC_021654_00004 - - NC_021654 0.00308338 767
AI2723_v1_c3 366-B 258 Browse 2 15 14708 6.52
Klebsiella pneumoniae
53.86 Mobilizable ColRNAI_rep_cluster_1857 000003__NC_002119_00001 MOBC NC_009793_00003 - - - - JX442973 0.00009552 762