Collection CNM
Isolation Year 2016
Isolation Location Hospital Sant Joan de Deu (Fundació Althaia. Manresa)
Hospital Admission Unit Surgery
Patient Sex F
Patient Age 81
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation abscess
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC-3
MLST 307:gapA(4), infB(1), mdh(2), pgi(52), phoE(1), rpoB(1), tonB(7)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 1 S S
CEF 64 R R
AZT >128 R R
MEM 16 R R
IMI 8 R R
IMI-RELE 0.25 S S
ERT 16 R R
FOSFO <32 S S
GENTA 32 R R
TOBRA 8 I R
AMK 1 S S
CIP 64 R R
COLIS <0.06 WT S
AI2722_v1
AI2722_v1

Sample 365-B was assembled with Unicycler_v0.4.6 into 3 scaffolds, 3 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2722_v1_c1 365-B 307 Browse 32 4919 5356268 1.00
Klebsiella pneumoniae
57.40 Non-mobilizable - - - - MPF_T NC_010726_00014, NC_005814_00013, NC_010726_00011, NC_013284_00016 - - CP015754 0.20360400 1583
AI2722_v1_c2 365-B 307 Browse 30 134 135027 0.74
Klebsiella pneumoniae
51.35 Non-mobilizable IncFIB 000107__CP014778_00094 - - - - - - KY271404 0.01513420 770
AI2722_v1_c3 365-B 307 Browse 8 120 113639 1.26
Klebsiella pneumoniae
53.93 Conjugative IncFII, IncFIB 000113__CP022035, 000097__NC_025166_00051, 000130__CP023489 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_019389_00068, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019389_00080, NC_023905_00125 - - KY271403 0.00040999 1220