Collection CNM
Isolation Year 2016
Isolation Location Complejo Hospitalario de Pontevedra (Pontevedra)
Hospital Admission Unit Internal medicine
Patient Sex F
Patient Age 87
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC-2
MLST 1961:gapA(1), infB(1), mdh(1), pgi(1), phoE(1), rpoB(116), tonB(1)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 256 R R
CTX 8 R R
CAZ 4 S I
CAZ-AVI 0.5 S S
CEF 2 S I
AZT 8 I R
MEM 2 I S
IMI 4 R I
IMI-RELE ≤0.12 S S
ERT 0.5 S S
FOSFO >256 R R
GENTA ≤0.25 S S
TOBRA ≤0.25 S S
AMK 0.25 S S
CIP 8 R R
COLIS <0.06 WT S
AI2717_v1
AI2717_v1

Sample 357-B was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2717_v1_c1 357-B 1961 Browse 31 4746 5190356 1.00
Klebsiella pneumoniae
57.48 Mobilizable - - MOBP NC_021576_00050 - - - - CP007734 0.23011000 1586
AI2717_v1_c2 357-B 1961 Browse 8 294 289840 1.25
Klebsiella pneumoniae
47.33 Conjugative rep_cluster_1150 000430__CP020850 MOBH NC_016980_00239 MPF_F NC_016980_00240, NC_018107_00101, NC_016980_00110, NC_016980_00109, NC_016980_00099, NC_018107_00235, NC_023911_00309 - - CP015501 0.01956320 1530
AI2717_v1_c3 357-B 1961 Browse 16 220 214783 1.22
Klebsiella pneumoniae
50.77 Non-mobilizable IncFIB, rep_cluster_1150, IncU 000107__CP014778_00094, 000430__CP020850, 000212__CP012556_00176 - - - - - - CP021697 0.01730060 1526
AI2717_v1_c4 357-B 1961 Browse 0 38 42118 1.43
Escherichia coli
49.65 Non-mobilizable IncR 000204__CP008701_00115 - - - - - - CP022226 0.05057460 781
AI2717_v1_c5 357-B 1961 Browse 2 48 40577 5.85
Aeromonas hydrophila
57.86 Mobilizable IncP, IncU 000172__KU578314_00001, 000210__KF623109_00045 MOBP NC_003124_00014 - - - - KU578314 0.00121124 891