Collection CNM
Isolation Year 2016
Isolation Location Complejo Hospitalario Universitario de Albacete (Albacete)
Hospital Admission Unit ICU
Patient Sex F
Patient Age 79
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation wound
Infection or Colonization C
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) KPC-2
MLST 1381:dnaA(364), fusA(43), gyrB(218), leuS(453), pyrG(197), rplB(61), rpoB(129)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 4 S S
CEF 64 R R
AZT 128 R R
MEM 16 R R
IMI 8 R R
IMI-RELE 0.25 S S
ERT 64 R R
FOSFO 32 S S
GENTA ≤0.25 S S
TOBRA 2 S S
AMK 8 S S
CIP 64 R R
COLIS 0.12 WT S
AI2983_v1
AI2983_v1

Sample 355-B was assembled with Unicycler_v0.4.6 into 3 scaffolds, 3 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2983_v1_c1 355-B 1381 Browse 31 4537 4919202 1.00
Escherichia coli
55.45 Non-mobilizable - - - - - - - - CP008824 0.21089700 966
AI2983_v1_c2 355-B 1381 Browse 21 243 213376 1.28
Enterobacter cloacae
52.30 Conjugative IncFIB 000108__NC_014107_00054 MOBF NC_014107_00160 MPF_F NC_014107_00125, NC_014107_00126, NC_014107_00127, NC_009425_00108, NC_014107_00135, NC_014107_00137, NC_014107_00139, NC_014107_00145, NC_014107_00146, NC_014107_00154, NC_014107_00155, NC_014107_00159, NC_014107_00147 - - CP012169 0.02088220 708
AI2983_v1_c3 355-B 1381 Browse 10 42 38355 9.12
Aeromonas hydrophila
58.90 Non-mobilizable IncU, rep_cluster_658 000210__KF623109_00045, 002113__KJ541070_00001 - - - - - - KJ541070 0.04471780 628