Collection CNM
Isolation Year 2016
Isolation Location Hospital Infanta Leonor (Madrid)
Hospital Admission Unit None
Patient Sex M
Patient Age 60
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Escherichia coli
Carbapenamase type(s) KPC-2
MLST 23:adk(6), fumC(4), gyrB(12), icd(1), mdh(20), purA(13), recA(7)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 128 R R
CAZ 32 R R
CAZ-AVI ≤0.25 S S
CEF 64 R R
AZT 128 R R
MEM 4 R I
IMI 4 R I
IMI-RELE ≤0.12 S S
ERT 32 R R
FOSFO 32 S S
GENTA 1 S S
TOBRA 2 S S
AMK 8 S S
CIP 32 R R
COLIS <0.06 WT S
AI2715_v1
AI2715_v1

Sample 354-B was assembled with Unicycler_v0.4.6 into 6 scaffolds, 6 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2715_v1_c1 354-B 23 Browse 68 4577 4879412 1.00
Escherichia coli
50.57 Non-mobilizable - - - - - - - - CP010208 0.19173100 2912
AI2715_v1_c2 354-B 23 Browse 21 135 125197 1.31
Escherichia coli
51.33 Conjugative IncFII, IncFIB, IncFIIA, IncQ1 000136__AP014877_00014, 000121__CP024805, 000095__NZ_CP014273_00094, 000195__NC_013728_00014 MOBF, MOBP NC_011416_00039, NC_011980_00044 MPF_F NC_017639_00094, NC_019094_00090, NC_010409_00124, NC_022651_00077, NC_007607_00115 MOBF FN868248 NC_011964 0.01287200 971
AI2715_v1_c3 354-B 23 Browse 2 108 97252 1.07
Salmonella enterica
50.24 Conjugative IncI1 000145__HE610900_00001 MOBP NC_019097 MPF_I NC_019097_00056, NC_022267_00057, NC_019111_00038, NC_023290_00086, NC_015965_00072, NC_019097_00075, NC_022267_00069, NZ_CM001473_00069, NC_019097_00085 MOBP JN253636 CP016520 0.00113443 476
AI2715_v1_c4 354-B 23 Browse 2 49 39780 5.90
Aeromonas hydrophila
58.12 Mobilizable IncP, IncU 000172__KU578314_00001, 000210__KF623109_00045 MOBP NC_003124_00014 - - - - KU578314 0.00165343 891
AI2715_v1_c5 354-B 23 Browse 0 6 5252 8.22
Enterobacter roggenkampii
49.98 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006, NC_011404_00002 - - MOBP CP008720 KU302806 0.04378560 107
AI2715_v1_c6 354-B 23 Browse 0 2 2317 8.83
Klebsiella pneumoniae
49.20 Mobilizable ColRNAI_rep_cluster_1987 000020__CP023920 - - - - MOBP CP018941 CP018317 0.01995140 58