Collection CNM
Isolation Year 2016
Isolation Location Hospital Universitario Gregorio Marañón (Madrid)
Hospital Admission Unit None
Patient Sex F
Patient Age 84
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation wound
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC-2
MLST 273:gapA(3), infB(4), mdh(6), pgi(1), phoE(7), rpoB(4), tonB(4)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper 256 R R
P/T 256 R R
CTX >128 R R
CAZ 64 R R
CAZ-AVI ≤0.25 S S
CEF >128 R R
AZT >128 R R
MEM 64 R R
IMI 32 R R
IMI-RELE ≤0.12 S S
ERT 128 R R
FOSFO <32 S S
GENTA 16 R R
TOBRA 0.5 S S
AMK 32 I R
CIP 16 R R
COLIS <0.06 WT S
AI2713_v1
AI2713_v1

Sample 352-B was assembled with Unicycler_v0.4.6 into 8 scaffolds, 8 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2713_v1_c1 352-B 273 Browse 45 4987 5355320 1.00
Klebsiella pneumoniae
57.46 Non-mobilizable - - - - - - - - CP007734 0.20360400 1586
AI2713_v1_c2 352-B 273 Browse 1 149 161750 1.16
Klebsiella pneumoniae
49.96 Non-mobilizable IncFIB, IncH, rep_cluster_1150 000107__CP014778_00094, 000430__CP020850, 000137__CP017986_00041 - - - - - - CP015026 0.00251903 1526
AI2713_v1_c3 352-B 273 Browse 2 112 98537 1.36
Raoultella planticola
53.00 Conjugative IncFII, rep_cluster_1418 000124__KP125893_00142, 000759__NC_013950_00034 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_019389_00068, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019389_00080, NC_019155_00032 - - CP020843 0.01296770 1585
AI2713_v1_c4 352-B 273 Browse 1 15 20618 11.05
Klebsiella pneumoniae
56.68 Non-mobilizable ColRNAI_rep_cluster_1987, rep_cluster_2050 001473__CP024541, 000019__CP000651_00005 - - - - - - NC_019151 0.02115480 1575
AI2713_v1_c5 352-B 273 Browse 2 7 12628 14.27
Escherichia coli, Klebsiella pneumoniae
59.32 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - MOBP CP018223 NC_019151 0.00659353 1575
AI2713_v1_c6 352-B 273 Browse 0 4 4173 10.07
Klebsiella pneumoniae
41.50 Non-mobilizable ColRNAI_rep_cluster_1987, rep_cluster_2050 001473__CP024541, 000019__CP000651_00005 - - - - - - EU932690 0.00063137 205
AI2713_v1_c7 352-B 273 Browse 0 4 3223 16.33
Citrobacter freundii, Salmonella enterica, Serratia marcescens
56.35 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_013090_00004 - - MOBP CP018941 CP016867 0.00011950 133
AI2713_v1_c8 352-B 273 Browse 0 1 1748 16.76
Escherichia coli
57.55 Non-mobilizable ColRNAI_rep_cluster_1993 000024__JX133088 - - - - - - KU302803 0.05675660 78