Collection CNM
Isolation Year 2016
Isolation Location Complejo Hospitalario de Pontevedra (Pontevedra)
Hospital Admission Unit Pneumology
Patient Sex F
Patient Age 39
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation wound
Infection or Colonization C
Outbreak None
Genus/Species
Raoultella ornithinolytica
Carbapenamase type(s) KPC-2
MLST 0:
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 256 R R
CTX >128 R R
CAZ 64 R R
CAZ-AVI 0.5 S S
CEF 64 R R
AZT >128 R R
MEM 8 R I
IMI 16 R R
IMI-RELE 1 S S
ERT 32 R R
FOSFO <32 S S
GENTA ≤0.25 S S
TOBRA ≤0.25 S S
AMK 2 S S
CIP 4 R R
COLIS 0.12 WT S
AI2711_v1
AI2711_v1

Sample 347-B was assembled with Unicycler_v0.4.6 into 4 scaffolds, 4 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2711_v1_c1 347-B 0 Browse 23 5066 5527863 1.00
Raoultella ornithinolytica
55.74 Non-mobilizable - - - - - - - - AP012055 0.29598100 769
AI2711_v1_c2 347-B 0 Browse 15 246 228616 1.62
Salmonella enterica
45.80 Mobilizable rep_cluster_1088, IncH 000139__NC_012555_00001, 000338__NC_021819 - - MPF_F NC_005211_00200, NC_005211_00207, NC_005211_00005, NC_009838_00006, NC_005211_00012, NC_021845_00017, NC_005211_00030 MOBH NC_017484 LN794248 0.00737682 429
AI2711_v1_c3 347-B 0 Browse 2 49 40356 12.10
Aeromonas hydrophila
57.85 Mobilizable IncP, IncU 000172__KU578314_00001, 000210__KF623109_00045 MOBP NC_003124_00014 - - - - KU578314 0.00121124 891
AI2711_v1_c4 347-B 0 Browse 0 8 6937 10.89
Escherichia coli
49.85 Non-mobilizable ColRNAI_rep_cluster_1987, rep_cluster_2050 001473__CP024541, 000019__CP000651_00005 - - - - - - CP011619 0.07785870 203