Collection CNM
Isolation Year 2016
Isolation Location Hospital Universitario Gregorio Marañón (Madrid)
Hospital Admission Unit None
Patient Sex F
Patient Age 70
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation wound
Infection or Colonization C
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) KPC-2
MLST 96:dnaA(57), fusA(39), gyrB(49), leuS(57), pyrG(49), rplB(12), rpoB(20)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 64 R R
CAZ 64 R R
CAZ-AVI 2 S S
CEF 64 R R
AZT 64 R R
MEM 128 R R
IMI 64 R R
IMI-RELE 1 S S
ERT 1 I R
FOSFO 32 S S
GENTA ≤0.25 S S
TOBRA 4 S R
AMK 2 S S
CIP 64 R R
COLIS <0.06 WT S
AI2704_v1
AI2704_v1

Sample 339-B was assembled with Unicycler_v0.4.6 into 6 scaffolds, 6 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2704_v1_c1 339-B 96 Browse 49 4378 4802485 1.00
Enterobacter roggenkampii
56.00 Non-mobilizable - - - - - - - - CP008824 0.17817300 966
AI2704_v1_c2 339-B 96 Browse 13 139 127430 1.38
Citrobacter koseri
54.24 Conjugative IncFII, IncFIB 000113__CP022035, 000122__JQ418538, 000101__NZ_CP012345_00042 MOBF NC_021501_00073 MPF_F NC_021501_00097, NC_006323_00096, NC_006323_00097, NC_009378_00101, NC_006323_00105, NC_021501_00085, NC_021501_00084, NC_021501_00083, NC_006323_00113, NC_021501_00076, NC_021501_00074 - - CP017059 0.02468310 748
AI2704_v1_c3 339-B 96 Browse 0 74 55379 1.37
Salmonella enterica
46.62 Conjugative rep_cluster_1368 000688__CP006788_00033 MOBP NC_022650_00002 MPF_T NC_023907_00043, NC_023907_00045, NC_023907_00079 - - CP006788 0.02831510 649
AI2704_v1_c4 339-B 96 Browse 2 49 40289 4.32
Aeromonas hydrophila
57.87 Mobilizable IncP, IncU 000172__KU578314_00001, 000210__KF623109_00045 MOBP NC_003124_00014 - - - - KU578314 0.00128842 891
AI2704_v1_c5 339-B 96 Browse 0 6 5252 13.58
Enterobacter roggenkampii
49.98 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_011404_00002 - - MOBP CP008720 KU302806 0.04363290 107
AI2704_v1_c6 339-B 96 Browse 0 4 3223 18.19
Citrobacter freundii, Enterobacter hormaechei, Klebsiella michiganensis, Klebsiella pneumoniae, Salmonella enterica
56.35 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006, NC_013090_00004 - - MOBP CP018941 CP016867 0.00026408 133