Collection CNM
Isolation Year 2016
Isolation Location Hospital Universitario Gregorio Marañón (Madrid)
Hospital Admission Unit Surgery
Patient Sex F
Patient Age 70
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation wound
Infection or Colonization I
Outbreak None
Genus/Species
Escherichia coli
Carbapenamase type(s) KPC-2
MLST 162:adk(9), fumC(65), gyrB(5), icd(1), mdh(9), purA(13), recA(6)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 16 R R
CAZ 8 I R
CAZ-AVI ≤0.25 S S
CEF 4 SDD I
AZT 16 R R
MEM 8 R I
IMI 8 R R
IMI-RELE ≤0.12 S S
ERT 4 R R
FOSFO <32 S S
GENTA 0.5 S S
TOBRA 0.5 S S
AMK 1 S S
CIP 2 R R
COLIS <0.06 WT S
AI2703_v1
AI2703_v1

Sample 338-B was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2703_v1_c1 338-B 162 Browse 63 4436 4814770 1.00
Escherichia coli
50.72 Non-mobilizable - - - - - - - - CP010208 0.20360400 2912
AI2703_v1_c2 338-B 162 Browse 16 146 145050 1.07
Escherichia coli
50.56 Conjugative IncFII, IncFIB, IncFIIA 000136__AP014877_00014, 000121__CP024805, 000095__NZ_CP014273_00094 MOBF NC_017627_00068 MPF_F NC_008460_00107, NC_010488_00021, NC_017639_00100, NC_007675_00027, NC_013437_00116, NC_017639_00094, NC_019094_00090, NC_010409_00124, NC_022651_00077, 08-5333_00200, NC_014615_00033, NC_018966_00040 MOBF FN868248 KR827684 0.00458019 973
AI2703_v1_c3 338-B 162 Browse 0 119 110667 0.91
Escherichia coli
45.70 Non-mobilizable IncFIB 000105__NC_011917_00001 - - - - - - CP017847 0.01735900 920
AI2703_v1_c4 338-B 162 Browse 0 77 55379 2.02
Salmonella enterica
46.62 Conjugative rep_cluster_1368 000688__CP006788_00033 MOBP NC_022650_00002 MPF_T NC_023907_00043, NC_023907_00045, NC_023907_00079 - - KY352406 0.02822470 649
AI2703_v1_c5 338-B 162 Browse 3 50 40408 4.66
Aeromonas hydrophila
57.87 Mobilizable IncP, IncU 000172__KU578314_00001, 000210__KF623109_00045 MOBP NC_003124_00014 - - - - KU578314 0.00128842 891