Collection CNM
Isolation Year 2016
Isolation Location Hospital Puerta de Hierro (Madrid)
Hospital Admission Unit ICU
Patient Sex M
Patient Age 60
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation wound
Infection or Colonization C
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) VIM-1
MLST 14:gapA(1), infB(6), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(1)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 128 R R
CAZ 128 R R
CAZ-AVI ≤0.25 S S
CEF 64 R R
AZT 16 R R
MEM 8 R I
IMI 4 R I
IMI-RELE 0.25 S S
ERT 1 I R
FOSFO <32 S S
GENTA ≤0.25 S S
TOBRA ≤0.25 S S
AMK 4 S S
CIP 1 R R
COLIS <0.06 WT S
AI2702_v1
AI2702_v1

Sample 337-B was assembled with Unicycler_v0.4.6 into 3 scaffolds, 3 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2702_v1_c1 337-B 14 Browse 24 4902 5323319 1.00
Klebsiella pneumoniae
57.42 Non-mobilizable - - - - - - - - CP007734 0.23011000 1586
AI2702_v1_c2 337-B 14 Browse 6 201 202515 1.35
Klebsiella pneumoniae
53.53 Mobilizable IncFIB 000107__CP014778_00094 MOBP NC_021576_00050 - - - - CP021856 0.02061260 767
AI2702_v1_c3 337-B 14 Browse 9 100 78064 1.97
Klebsiella pneumoniae
52.10 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - KU159085 0.00928558 681