Collection CNM
Isolation Year
Isolation Location
Hospital Admission Unit None
Patient Sex None
Patient Age 0
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation None
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC-3
MLST 512:gapA(54), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(79)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 32 R R
CAZ 64 R R
CAZ-AVI 2 S S
CEF 32 R R
AZT 64 R R
MEM 128 R R
IMI 64 R R
IMI-RELE ≤0.12 S S
ERT 4 R R
FOSFO None None None
GENTA 0.5 S S
TOBRA 16 R R
AMK 2 S S
CIP 1 R R
COLIS <0.06 WT S
AN2338_v1
AN2338_v1

Sample 332 was assembled with Unicycler_v0.4.6 into 3 scaffolds, 3 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AN2338_v1_c1 332 512 Browse 30 5118 5435476 1.00
Klebsiella pneumoniae
57.34 Non-mobilizable - - - - - - - - CP007734 0.23011000 1586
AN2338_v1_c2 332 512 Browse 29 267 263040 1.85
Klebsiella pneumoniae
52.28 Conjugative IncFII, IncFIB, IncX3 000107__CP014778_00094, 000113__CP022035, 000132__HG969996, 000221__NC_025130_00012 MOBF, MOBP NC_021231_00058, NC_020552_00059 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_023332_00154, NC_014312_00118, NC_021502_00131, NC_019389_00080, NC_019155_00032, NC_021654_00004, NC_023277_00163, NC_019157_00029, NC_019157_00030, NC_019083_00030, NC_017624_00009 - - CP019773 0.00607761 767
AN2338_v1_c3 332 512 Browse 2 15 13636 7.33
Klebsiella pneumoniae
53.70 Mobilizable ColRNAI_rep_cluster_1857 000003__NC_002119_00001 MOBC NC_009793_00003 - - - - JN247853 0.00000000 762