Collection CNM
Isolation Year 2014
Isolation Location
Hospital Admission Unit None
Patient Sex None
Patient Age 0
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation None
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC-2
MLST 11:gapA(3), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(4)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper 256 R R
P/T 128 R R
CTX 16 R R
CAZ 64 R R
CAZ-AVI 0.5 S S
CEF 8 SDD R
AZT 128 R R
MEM 8 R I
IMI 4 R I
IMI-RELE ≤0.12 S S
ERT 8 R R
FOSFO <32 S S
GENTA 8 I R
TOBRA 32 R R
AMK 1 S S
CIP 32 R R
COLIS <0.06 WT S
AI3053_v1
AI3053_v1

Sample 328-B was assembled with Unicycler_v0.4.6 into 4 scaffolds, 4 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI3053_v1_c1 328-B 11 Browse 29 5045 5372019 1.00
Klebsiella pneumoniae
57.49 Non-mobilizable - - - - - - - - CP007734 0.21953100 1586
AI3053_v1_c2 328-B 11 Browse 33 217 214042 0.99
Klebsiella pneumoniae
53.39 Non-mobilizable IncFII, IncFIB 000107__CP014778_00094, 000113__CP022035, 000132__HG969996 - - MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019389_00080, NC_019155_00032, NC_021654_00004 - - CP021713 0.00167981 767
AI3053_v1_c3 328-B 11 Browse 4 53 53245 4.49
Klebsiella pneumoniae
53.47 Mobilizable IncX1, IncR 000204__CP008701_00115, 000215__KC853434_00019 MOBP NC_021576_00050 - - - - CP011644 0.02001670 730
AI3053_v1_c4 328-B 11 Browse 2 47 39388 10.96
Aeromonas hydrophila
58.20 Mobilizable IncP, IncU 000172__KU578314_00001, 000210__KF623109_00045 MOBP NC_003124_00014 - - - - KU578314 0.00045892 891