Collection CNM
Isolation Year 2014
Isolation Location
Hospital Admission Unit None
Patient Sex None
Patient Age
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation None
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) KPC-2
MLST 1383:dnaA(57), fusA(39), gyrB(49), leuS(57), pyrG(353), rplB(12), rpoB(20)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 32 R R
CAZ 16 R R
CAZ-AVI 2 S S
CEF 4 SDD I
AZT 16 R R
MEM 64 R R
IMI 32 R R
IMI-RELE 0.5 S S
ERT 4 R R
FOSFO 64 S R
GENTA 64 R R
TOBRA 8 I R
AMK 2 S S
CIP 8 R R
COLIS <0.06 WT S
AI3050_v1
AI3050_v1

Sample 325-B was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI3050_v1_c1 325-B 1383 Browse 31 4423 4835190 1.00
Enterobacter roggenkampii
55.99 Non-mobilizable - - - - - - - - CP008824 0.17817300 966
AI3050_v1_c2 325-B 1383 Browse 15 166 159426 0.83
Citrobacter koseri
54.19 Conjugative IncFII, IncFIB 000113__CP022035, 000122__JQ418538, 000101__NZ_CP012345_00042 MOBF NC_021501_00073 MPF_F NC_021501_00097, NC_006323_00096, NC_006323_00097, NC_009378_00101, NC_006323_00105, NC_021501_00085, NC_021501_00084, NC_021501_00083, NC_006323_00113, NC_021501_00076, NC_021501_00074 - - CP017059 0.01508130 748
AI3050_v1_c3 325-B 1383 Browse 1 49 40408 5.35
Aeromonas hydrophila
57.87 Mobilizable IncP, IncU 000172__KU578314_00001, 000210__KF623109_00045 MOBP NC_003124_00014 - - - - KU578314 0.00128842 891
AI3050_v1_c4 325-B 1383 Browse 0 7 5252 18.78
Enterobacter roggenkampii
49.98 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006, NC_011404_00002 - - MOBP CP008720 KU302806 0.04332960 107
AI3050_v1_c5 325-B 1383 Browse 0 4 3223 26.06
Salmonella enterica
56.35 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_013090_00004 - - MOBP CP018941 CP016867 0.00007159 133