Collection CNM
Isolation Year 2012
Isolation Location Hospital Fundación de Alcorcón (Madrid)
Hospital Admission Unit Gastroenterology
Patient Sex M
Patient Age 68
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation biopsy
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC-2
MLST 101:gapA(2), infB(6), mdh(1), pgi(5), phoE(4), rpoB(1), tonB(6)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 128 R R
CAZ 128 R R
CAZ-AVI 0.5 S S
CEF 16 R R
AZT 128 R R
MEM 4 R I
IMI 4 R I
IMI-RELE ≤0.12 S S
ERT 8 R R
FOSFO <32 S S
GENTA 128 R R
TOBRA 128 R R
AMK 4 S S
CIP 64 R R
COLIS <0.06 WT S
AI3049_v1
AI3049_v1

Sample 324-B was assembled with Unicycler_v0.4.6 into 7 scaffolds, 7 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI3049_v1_c1 324-B 101 Browse 27 5110 5489253 1.00
Klebsiella pneumoniae
57.20 Non-mobilizable - - - - MPF_T NC_010726_00014, NC_005814_00013, NC_010726_00011, NC_013284_00016 - - CP015754 0.21089700 1583
AI3049_v1_c2 324-B 101 Browse 12 111 110140 1.13
Klebsiella pneumoniae
51.95 Non-mobilizable IncR, IncFIA, rep_cluster_1418 000204__CP008701_00115, 000093__KX023259_00112, 000759__NC_013950_00034 - - - - - - CP009116 0.01777160 726
AI3049_v1_c3 324-B 101 Browse 0 104 91304 1.94
Klebsiella pneumoniae
52.57 Conjugative IncFII, IncFIB 000124__KP125893_00142, 000097__NC_025166_00051 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019389_00080, NC_019155_00032, NC_021231_00085 - - CP014669 0.03347510 1577
AI3049_v1_c4 324-B 101 Browse 0 52 53236 5.75
Klebsiella pneumoniae
53.35 Non-mobilizable rep_cluster_1 000232__CP012429 - - - - - - CP015504 0.01193830 1705
AI3049_v1_c5 324-B 101 Browse 1 47 39199 8.21
Aeromonas hydrophila
58.20 Mobilizable IncP, IncU 000172__KU578314_00001, 000210__KF623109_00045 MOBP NC_003124_00014 - - - - KU578314 0.00031257 891
AI3049_v1_c6 324-B 101 Browse 0 4 4163 19.84
Klebsiella pneumoniae
45.78 Non-mobilizable ColRNAI_rep_cluster_1987, rep_cluster_2050 001473__CP024541, 000019__CP000651_00005 - - - - - - CP018739 0.06132640 207
AI3049_v1_c7 324-B 101 Browse 0 5 4052 34.57
Klebsiella pneumoniae
53.65 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_016979_00005 - - MOBP CP018941 CP018740 0.00023990 95