Collection CNM
Isolation Year 2013
Isolation Location Lab. Dr. Echevarne (Pontevedra)
Hospital Admission Unit None
Patient Sex M
Patient Age 93
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC-3
MLST 512:gapA(54), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(79)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 2 I I
CAZ 2 S I
CAZ-AVI 2 S S
CEF 4 SDD I
AZT 2 S I
MEM >128 R R
IMI 64 R R
IMI-RELE 0.25 S S
ERT 0.5 S S
FOSFO <32 S S
GENTA 1 S S
TOBRA 32 R R
AMK 0.5 S S
CIP 1 R R
COLIS <0.06 WT S
AI3046_v2
AI3046_v2

Sample 321-B was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI3046_v2_c1 321-B 512 Browse 26 5050 5375832 1.00 None 57.41 Non-mobilizable - - - - - - - - CP007734 0.23011000 1586
AI3046_v2_c2 321-B 512 Browse 6 203 205280 1.12 None 52.88 Conjugative IncFII, IncFIB 000107__CP014778_00094, 000113__CP022035, 000132__HG969996 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019389_00080, NC_019155_00032, NC_021654_00004 - - CP015823 0.00009552 767
AI3046_v2_c3 321-B 512 Browse 5 120 114203 1.79 None 53.84 Conjugative IncFII, IncFIB 000113__CP022035, 000097__NC_025166_00051, 000130__CP023489 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_019389_00068, NC_023332_00154, NC_014312_00118, NC_021502_00131, NC_019389_00080, NC_023905_00125 - - KF874498 0.00340187 1220
AI3046_v2_c4 321-B 512 Browse 1 52 43380 5.24 None 46.83 Conjugative IncX3 000221__NC_025130_00012 MOBP NC_020552_00059 MPF_T NC_019157_00029, NC_019157_00030, NC_019083_00030, NC_017624_00009 - - JN247852 0.00009552 664
AI3046_v2_c5 321-B 512 Browse 2 16 13636 21.19 None 53.70 Mobilizable ColRNAI_rep_cluster_1857 000003__NC_002119_00001 MOBC NC_009793_00003 - - - - JN247853 0.00004769 762