Collection CNM
Isolation Year 2012
Isolation Location Hospital Puerta de Hierro (Madrid)
Hospital Admission Unit None
Patient Sex M
Patient Age 74
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation blood culture
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) KPC-2
MLST 96:dnaA(57), fusA(39), gyrB(49), leuS(57), pyrG(49), rplB(12), rpoB(20)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 256 R R
CTX 1 S S
CAZ 0.5 S S
CAZ-AVI 0.5 S S
CEF 1 S S
AZT 0.5 S S
MEM 4 R I
IMI 2 I S
IMI-RELE ≤0.12 S S
ERT 0.5 S S
FOSFO 32 S S
GENTA 16 R R
TOBRA 128 R R
AMK 2 S S
CIP 1 R R
COLIS <0.06 WT S
AI3045_v2
AI3045_v2

Sample 320-B was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI3045_v2_c1 320-B 96 Browse 32 4437 4854366 1.00 None 56.05 Conjugative IncP 000164__NC_022344_00310 MOBP NC_022344_00316 MPF_T NC_022344_00321, NC_022344_00326, NC_022344_00330, NC_015727_00490 - - CP008824 0.17817300 966
AI3045_v2_c2 320-B 96 Browse 6 322 314075 1.20 None 47.19 Conjugative rep_cluster_1088, IncH 000139__NC_012555_00001, 000338__NC_021819 MOBH NC_012555_00231 MPF_F NC_005211_00200, NC_005211_00207, NC_005211_00005, NC_009838_00006, NC_005211_00012, NC_021845_00017, NC_005211_00030 MOBH NC_017484 CP022533 0.00989629 429
AI3045_v2_c3 320-B 96 Browse 4 75 61766 4.32 None 47.74 Conjugative IncX5 000226__MF062700 MOBP NC_019096_00001 MPF_T NC_023277_00163, NC_019899_00040, NC_019899_00039, NC_019899_00038, NC_019899_00035 - - CP011588 0.00550978 363
AI3045_v2_c4 320-B 96 Browse 1 48 39386 9.98 None 58.20 Mobilizable IncP, IncU 000172__KU578314_00001, 000210__KF623109_00045 MOBP NC_003124_00014 - - - - KU578314 0.00031257 891
AI3045_v2_c5 320-B 96 Browse 0 2 2317 33.01 None 49.20 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - MOBP CP018941 CP018317 0.02054560 58