Collection CNM
Isolation Year 2013
Isolation Location Hospital de Móstoles (Madrid)
Hospital Admission Unit ICU
Patient Sex M
Patient Age 67
Community/Hospital/LTCF acquisition Hospital
Biological Sample of Isolation BAS
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) KPC-2
MLST 11:gapA(3), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(4)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 16 R R
CAZ 64 R R
CAZ-AVI 0.5 S S
CEF 128 R R
AZT >128 R R
MEM 128 R R
IMI 128 R R
IMI-RELE 0.5 S S
ERT 0.25 S S
FOSFO 128 I R
GENTA 256 R R
TOBRA 64 R R
AMK 128 R R
CIP 64 R R
COLIS 128 NWT R
AI3043_v5
AI3043_v5

Sample 318-B was assembled with Unicycler_v0.4.6 into 4 scaffolds, 4 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI3043_v5_c1 318-B 11 Browse 29 5045 5372468 1.00
Klebsiella pneumoniae
57.49 Non-mobilizable - - - - - - - - CP007734 0.21953100 1586
AI3043_v5_c2 318-B 11 Browse 33 217 214043 1.02
Klebsiella pneumoniae
53.39 Conjugative IncFII, IncFIB 000107__CP014778_00094, 000113__CP022035, 000132__HG969996 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019389_00080, NC_019155_00032, NC_021654_00004 - - CP021713 0.00167981 767
AI3043_v5_c3 318-B 11 Browse 9 67 63844 3.58
Klebsiella pneumoniae
52.87 Mobilizable IncX1, IncR 000204__CP008701_00115, 000215__KC853434_00019 MOBP NC_021576_00050 - - - - CP011644 0.01074050 730
AI3043_v5_c4 318-B 11 Browse 2 47 39114 9.00
Aeromonas hydrophila
58.20 Mobilizable IncP, IncU 000172__KU578314_00001, 000210__KF623109_00045 MOBP NC_003124_00014 - - - - KU578314 0.00045892 891