Collection SERGAS
Isolation Year 2017
Isolation Location Hospital de Guadalajara (Guadalajara)
Hospital Admission Unit Primary care
Patient Sex F
Patient Age 96
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) OXA-48
MLST 11:gapA(3), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(4)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 128 R R
CTX 64 R R
CAZ 0.25 S S
CAZ-AVI 0.25 S S
CEF 8 SDD R
AZT 32 R R
MEM ≤0.12 S S
IMI 1 S S
IMI-RELE ≤0.12 S S
ERT 0.12 S S
FOSFO >256 R R
GENTA ≤0.25 S S
TOBRA 8 I R
AMK 1 S S
CIP >128 R R
COLIS <0.06 WT S
AI2977_v1
AI2977_v1

Sample 315 was assembled with Unicycler_v0.4.6 into 3 scaffolds, 3 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2977_v1_c1 315 11 Browse 31 5002 5335903 1.00
Klebsiella pneumoniae
57.42 Non-mobilizable - - - - MPF_T NC_010726_00014, NC_005814_00013, NC_010726_00011, NC_013284_00016 - - CP015754 0.20360400 1583
AI2977_v1_c2 315 11 Browse 29 149 151958 1.19
Klebsiella pneumoniae
52.76 Non-mobilizable IncFII, IncFIB 000107__CP014778_00094, 000113__CP022035, 000132__HG969996 - - - - - - CP021856 0.00698112 767
AI2977_v1_c3 315 11 Browse 6 51 48342 2.87
Klebsiella pneumoniae
49.88 Conjugative IncR 000204__CP008701_00115 MOBF, MOBP NC_015599_00019, NC_021576_00050 MPF_T NC_022375_00024 MOBF NZ_CP012928 CP014299 0.02484130 730