Collection SERGAS
Isolation Year 2017
Isolation Location Hospital de Guadalajara (Guadalajara)
Hospital Admission Unit Primary care
Patient Sex F
Patient Age 82
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) OXA-48
MLST 11:gapA(3), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(4)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 128 R R
CTX 128 R R
CAZ 128 R R
CAZ-AVI 8 S S
CEF 16 R R
AZT 128 R R
MEM 8 R I
IMI 4 R I
IMI-RELE 4 R R
ERT 4 R R
FOSFO 256 R R
GENTA >256 R R
TOBRA >256 R R
AMK 16 S R
CIP >128 R R
COLIS <0.06 WT S
AI2973_v2
AI2973_v2

Sample 310 was assembled with Unicycler_v0.4.6 into 3 scaffolds, 3 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2973_v2_c1 310 11 Browse 26 4991 5332354 1.00 None 57.43 Non-mobilizable - - - - MPF_T NC_010726_00014, NC_005814_00013, NC_010726_00011, NC_013284_00016 - - CP015754 0.20360400 1583
AI2973_v2_c2 310 11 Browse 2 103 99593 1.17 None 51.67 Non-mobilizable IncFII, IncFIB 000107__CP014778_00094, 000113__CP022035, 000132__HG969996 - - - - - - CP006927 0.01701110 769
AI2973_v2_c3 310 11 Browse 8 101 98795 2.79 None 53.00 Conjugative IncR 000204__CP008701_00115 MOBF, MOBP NC_015599_00019, NC_021576_00050 MPF_T NC_022375_00024 MOBF NZ_CP012928 CP011990 0.03282900 767