Collection SERGAS
Isolation Year 2017
Isolation Location Hospital de Guadalajara (Guadalajara)
Hospital Admission Unit Primary care
Patient Sex M
Patient Age 88
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) OXA-48
MLST 307:gapA(4), infB(1), mdh(2), pgi(52), phoE(1), rpoB(1), tonB(7)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper 256 R R
P/T 256 R R
CTX 2 I I
CAZ 2 S I
CAZ-AVI ≤0.25 S S
CEF 0.5 S S
AZT 0.25 S S
MEM 1 S S
IMI 1 S S
IMI-RELE 0.5 S S
ERT 1 I R
FOSFO 256 R R
GENTA ≤0.25 S S
TOBRA ≤0.25 S S
AMK 0.5 S S
CIP 64 R R
COLIS <0.06 WT S
AI2957_v1
AI2957_v1

Sample 291 was assembled with Unicycler_v0.4.6 into 10 scaffolds, 9 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2957_v1_c1 291 307 Browse 28 4981 5371592 1.00
Klebsiella pneumoniae
57.42 Non-mobilizable - - - - - - - - CP007734 0.21953100 1586
AI2957_v1_c2 291 307 Browse 9 300 297395 1.10
Klebsiella pneumoniae
47.28 Conjugative rep_cluster_1150 000430__CP020850 MOBH NC_016980_00239 MPF_F NC_016980_00240, NC_018107_00101, NC_016980_00110, NC_016980_00109, NC_016980_00099, NC_018107_00235, NC_023911_00309 - - CP015501 0.01905520 1530
AI2957_v1_c3 291 307 Browse 1 83 63589 1.14
Klebsiella pneumoniae
51.22 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00000000 681
AI2957_v1_c4 291 307 Browse 0 4 3991 19.12
Klebsiella pneumoniae
44.35 Non-mobilizable rep_cluster_2050 001473__CP024541 - - - - - - CP012558 0.08624910 195
AI2957_v1_c5 291 307 Browse 0 0 3918 0.75
Klebsiella pneumoniae
56.64 Non-mobilizable - - - - - - - - 1.00000000
AI2957_v1_c6 291 307 Browse 0 3 3670 21.12
Klebsiella pneumoniae
55.64 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006 - - MOBP CP018941 CP018740 0.04821050 95
AI2957_v1_c7 291 307 Browse 0 2 3516 26.72
Enterobacter hormaechei
55.29 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006, NC_019986_00002 - - MOBP CP001388 CP008845 0.02352650 192
AI2957_v1_c8 291 307 Browse 0 2 2058 37.39
Escherichia coli
56.51 Non-mobilizable ColRNAI_rep_cluster_1993 000024__JX133088 - - - - - - KU302803 0.00038558 78
AI2957_v1_c9 291 307 Browse 0 0 1949 11.71
Salmonella enterica
50.03 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - MOBP KT693145 CP019997 0.03781170 141
AI2957_v1_c10 291 307 Browse 0 0 1551 36.77
Escherichia coli
51.64 Mobilizable ColRNAI_rep_cluster_1885 000013__DQ995351_00001 - - - - MOBP, MOB_unknown CP018359, AB027308 JN253636 0.04666750 414