Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Central de Asturias (Oviedo)
Hospital Admission Unit ICU
Patient Sex M
Patient Age 82
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation wound
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) OXA-48
MLST 171:dnaA(49), fusA(21), gyrB(19), leuS(44), pyrG(45), rplB(12), rpoB(32)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI ≤0.25 S S
CEF >128 R R
AZT >128 R R
MEM 1 S S
IMI 1 S S
IMI-RELE 1 S S
ERT 4 R R
FOSFO <32 S S
GENTA 64 R R
TOBRA 16 R R
AMK 2 S S
CIP 8 R R
COLIS <0.06 WT S
AI2697_v1
AI2697_v1

Sample 284 was assembled with Unicycler_v0.4.6 into 4 scaffolds, 4 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2697_v1_c1 284 171 Browse 33 4346 4673327 1.00
Enterobacter hormaechei
55.29 Non-mobilizable - - - - - - - - CP008824 0.17817300 966
AI2697_v1_c2 284 171 Browse 1 84 63570 2.46
Klebsiella pneumoniae
51.21 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00016755 681
AI2697_v1_c3 284 171 Browse 0 2 2495 10.67
Enterobacter hormaechei
51.42 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - MOB_unknown NC_017722 CP010389 0.00115999 215
AI2697_v1_c4 284 171 Browse 0 2 2317 15.37
Klebsiella pneumoniae
49.24 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - MOBP CP018941 CP018317 0.02014780 58