Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Central de Asturias (Oviedo)
Hospital Admission Unit ICU
Patient Sex M
Patient Age 76
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation wound
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) OXA-48
MLST 1379:dnaA(52), fusA(21), gyrB(20), leuS(44), pyrG(45), rplB(4), rpoB(245)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 256 R R
CTX 128 R R
CAZ 128 R R
CAZ-AVI ≤0.25 S S
CEF 128 R R
AZT 128 R R
MEM 1 S S
IMI 1 S S
IMI-RELE 0.5 S S
ERT 4 R R
FOSFO <32 S S
GENTA 64 R R
TOBRA 16 R R
AMK 16 S R
CIP 16 R R
COLIS <0.06 WT S
AI2696_v1
AI2696_v1

Sample 282 was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2696_v1_c1 282 1379 Browse 25 4461 4817852 1.00
Enterobacter hormaechei
55.28 Non-mobilizable - - - - - - - - KR653209 0.20360400 430
AI2696_v1_c2 282 1379 Browse 9 147 131622 1.27
Enterobacter hormaechei
51.22 Non-mobilizable IncFII, IncFIB 000135__NC_014107_00001, 000108__NC_014107_00054 - - - - - - CP012169 0.01924450 708
AI2696_v1_c3 282 1379 Browse 1 84 63570 2.45
Klebsiella pneumoniae
51.22 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00000000 681
AI2696_v1_c4 282 1379 Browse 0 7 4783 8.31
Leclercia adecarboxylata
52.50 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006, NC_011404_00002 - - MOBP NC_010936 CP012164 0.01534700 100
AI2696_v1_c5 282 1379 Browse 0 3 2495 13.14
Enterobacter hormaechei
51.46 Mobilizable ColRNAI_rep_cluster_1857 000009__CP017845 - - - - MOB_unknown NC_017722 CP010389 0.00095658 215