Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Central de Asturias (Oviedo)
Hospital Admission Unit Hematology
Patient Sex M
Patient Age 72
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation sputum
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) OXA-48
MLST 78:dnaA(8), fusA(9), gyrB(6), leuS(9), pyrG(9), rplB(6), rpoB(8)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 16 R R
CAZ 4 S I
CAZ-AVI 0.5 S S
CEF 2 S I
AZT 8 I R
MEM 1 S S
IMI 1 S S
IMI-RELE 1 S S
ERT 2 R R
FOSFO 64 S R
GENTA ≤0.25 S S
TOBRA ≤0.25 S S
AMK 8 S S
CIP >128 R R
COLIS <0.06 WT S
AI2695_v1
AI2695_v1

Sample 281 was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2695_v1_c1 281 78 Browse 27 4243 4644587 1.00
Enterobacter cloacae
55.19 Non-mobilizable - - - - - - - - CP008824 0.18226900 966
AI2695_v1_c2 281 78 Browse 0 128 107168 1.23
Enterobacter cloacae
51.58 Non-mobilizable IncFIB 000104__CP010386_00052 - - - - - - CP021897 0.00146992 86
AI2695_v1_c3 281 78 Browse 1 84 63570 1.94
Klebsiella pneumoniae
51.22 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00000000 681
AI2695_v1_c4 281 78 Browse 4 66 49145 3.42
Enterobacter cloacae
46.64 Conjugative IncX3 000221__NC_025130_00012 MOBP NC_020552_00059 MPF_T NC_023277_00163, NC_019157_00030, NC_019083_00030, NC_017624_00009, NC_019083_00032 - - JN935899 0.03198970 667
AI2695_v1_c5 281 78 Browse 0 9 4995 20.67
Enterobacter roggenkampii
51.79 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_011404_00002 - - MOBP CP008720 NC_011404 0.00146992 102