Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Central de Asturias (Oviedo)
Hospital Admission Unit Otorhinolaryngology
Patient Sex F
Patient Age 67
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation wound
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) OXA-48
MLST 23:dnaA(22), fusA(15), gyrB(39), leuS(17), pyrG(47), rplB(11), rpoB(10)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 256 R R
CTX 8 R R
CAZ 2 S I
CAZ-AVI ≤0.25 S S
CEF 1 S S
AZT 4 S I
MEM 0.5 S S
IMI 0.5 S S
IMI-RELE 0.5 S S
ERT 2 R R
FOSFO 32 S S
GENTA ≤0.25 S S
TOBRA ≤0.25 S S
AMK 0.5 S S
CIP <0.06 S S
COLIS <0.06 WT S
AI2694_v1
AI2694_v1

Sample 279 was assembled with Unicycler_v0.4.6 into 6 scaffolds, 6 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2694_v1_c1 279 23 Browse 29 4649 4893140 1.00
Enterobacter asburiae
55.60 Non-mobilizable rep_cluster_24 001516__NC_015969_00028 - - - - - - KT203286 0.18226900 767
AI2694_v1_c2 279 23 Browse 1 120 109271 1.25
Enterobacter asburiae
52.82 Non-mobilizable IncFII, IncFIA 000093__KX023259_00112, 000114__CP015527, 000122__JQ418538 - - MPF_F NC_014312_00118, NC_014312_00116, NC_022609_00068 - - CP011587 0.02061260 780
AI2694_v1_c3 279 23 Browse 0 80 69721 1.53
Citrobacter freundii
53.42 Non-mobilizable IncFII 000114__CP015527, 000122__JQ418538 - - - - - - CP019904 0.07707080 1228
AI2694_v1_c4 279 23 Browse 1 88 65572 1.82
Klebsiella pneumoniae
51.29 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00055724 681
AI2694_v1_c5 279 23 Browse 0 42 40637 1.19
Enterobacter asburiae
51.80 Non-mobilizable IncFIB 000107__CP014778_00094 - - - - - - CP011590 0.03883880 774
AI2694_v1_c6 279 23 Browse 0 5 4804 10.80
Klebsiella pneumoniae
46.36 Non-mobilizable ColRNAI_rep_cluster_1987, rep_cluster_2050 001473__CP024541, 000019__CP000651_00005 - - - - - - CP018358 0.06343940 204