Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Central de Asturias (Oviedo)
Hospital Admission Unit Otorhinolaryngology
Patient Sex F
Patient Age 67
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation wound
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) OXA-48
MLST 567:gapA(2), infB(1), mdh(77), pgi(1), phoE(17), rpoB(4), tonB(42)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 256 R R
CTX 64 R R
CAZ 32 R R
CAZ-AVI ≤0.25 S S
CEF 64 R R
AZT 64 R R
MEM 0.5 S S
IMI 0.5 S S
IMI-RELE 0.5 S S
ERT 0.5 S S
FOSFO 32 S S
GENTA ≤0.25 S S
TOBRA ≤0.25 S S
AMK 4 S S
CIP 2 R R
COLIS <0.06 WT S
AI2693_v1
AI2693_v1

Sample 278 was assembled with Unicycler_v0.4.6 into 3 scaffolds, 3 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2693_v1_c1 278 567 Browse 27 4848 5231669 1.00
Klebsiella pneumoniae
57.48 Non-mobilizable - - - - - - - - CP007734 0.23011000 1586
AI2693_v1_c2 278 567 Browse 16 138 153380 1.05
Klebsiella oxytoca
52.27 Conjugative IncFII, IncFIB 000107__CP014778_00094, 000127__CP009275 MOBF, MOBP NC_021231_00058, NC_021576_00050 MPF_F NC_021502_00150, NC_014312_00141, NC_019165_00034 - - CP012884 0.02831510 768
AI2693_v1_c3 278 567 Browse 1 87 65572 1.64
Klebsiella pneumoniae
51.29 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00055724 681