Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Central de Asturias (Oviedo)
Hospital Admission Unit Primary care
Patient Sex F
Patient Age 95
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation wound
Infection or Colonization I
Outbreak None
Genus/Species
Escherichia coli
Carbapenamase type(s) OXA-48
MLST 131:adk(53), fumC(40), gyrB(47), icd(13), mdh(36), purA(28), recA(29)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 128 R R
CAZ >128 R R
CAZ-AVI ≤0.25 S S
CEF 32 R R
AZT 128 R R
MEM 0.5 S S
IMI 0.5 S S
IMI-RELE 0.5 S S
ERT 4 R R
FOSFO <32 S S
GENTA 128 R R
TOBRA 64 R R
AMK 2 S S
CIP 128 R R
COLIS <0.06 WT S
AI2951_v1
AI2951_v1

Sample 275 was assembled with Unicycler_v0.4.6 into 7 scaffolds, 7 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2951_v1_c1 275 131 Browse 68 4760 5070006 1.00
Escherichia coli
50.78 Mobilizable - - MOBP NC_021576_00050, NC_011416_00039 - - - - AP017893 0.21089700 476
AI2951_v1_c2 275 131 Browse 3 103 90741 1.82
Escherichia coli
50.65 Conjugative IncFII, IncFIIA 000136__AP014877_00014, 000121__CP024805 MOBF NC_017627_00068 MPF_F NC_010719_00097, NC_017639_00100, NC_007675_00027, NC_013437_00116, NC_017639_00094, NC_019094_00090, NC_010409_00124, NC_022651_00077, NC_018966_00040, NC_019094_00068, NC_010719_00096 MOBF CP016713 CP021938 0.02932930 546
AI2951_v1_c3 275 131 Browse 11 109 88990 2.56
Escherichia coli
52.35 Non-mobilizable ColRNAI_rep_cluster_1291, IncFIB, IncFIA 000094__NZ_CP015070_00117, 000096__NC_019117_00097, 000002__NC_009781 - - - - - - CP015140 0.01065450 1554
AI2951_v1_c4 275 131 Browse 1 86 63570 1.80
Klebsiella pneumoniae
51.22 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00000000 681
AI2951_v1_c5 275 131 Browse 0 45 31765 4.19
Escherichia coli
41.33 Conjugative IncX4 000224__NC_022105_00002 MOBP NC_013718_00057 MPF_T NC_013718_00041, NC_013718_00044, NC_013718_00045, NC_021079_00038 - - CP021735 0.00000000 586
AI2951_v1_c6 275 131 Browse 0 2 4087 12.40
Escherichia coli
49.87 Mobilizable rep_cluster_1778 001204__DQ995353 MOBQ NC_011411_00002 - - MOBQ NC_010672, NC_016036 CP010878 0.00023990 469
AI2951_v1_c7 275 131 Browse 0 2 1552 16.02
Escherichia coli
51.87 Mobilizable ColRNAI_rep_cluster_1885 000013__DQ995351_00001 - - - - MOB_unknown CP018359 JN253636 0.05019980 414